Variant report

Variant rs29742
Chromosome Location chr5:40756508-40756509
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40754200-40756600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
2 chr5:40754400-40756600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:40754600-40756600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:40754600-40756600 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
5 chr5:40754600-40756600 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
6 chr5:40754600-40756600 Active TSS Fetal Intestine Large intestine
7 chr5:40754600-40756600 Active TSS Rectal Mucosa Donor 29 rectum
8 chr5:40754800-40756600 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
9 chr5:40754800-40756600 Active TSS HUES64 Cell Line embryonic stem cell
10 chr5:40754800-40756600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr5:40754800-40756600 Active TSS Brain Hippocampus Middle brain
12 chr5:40754800-40756600 Active TSS NHEK skin
13 chr5:40755000-40756600 Active TSS HUES6 Cell Line embryonic stem cell
14 chr5:40755000-40756600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr5:40755000-40756600 Active TSS Primary hematopoietic stem cells short term culture blood
16 chr5:40755000-40756600 Active TSS Primary T killer memory cells from peripheral blood blood
17 chr5:40755000-40756600 Active TSS Muscle Satellite Cultured Cells --
18 chr5:40755000-40756600 Active TSS Fetal Brain Female brain
19 chr5:40755000-40756600 Active TSS HSMM muscle
20 chr5:40755200-40756600 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
21 chr5:40755200-40756600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
22 chr5:40755200-40756600 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr5:40755200-40756600 Active TSS Cortex derived primary cultured neurospheres brain
24 chr5:40755200-40756600 Active TSS A549 lung
25 chr5:40755400-40756600 Active TSS Primary T regulatory cells fromperipheralblood blood
26 chr5:40756000-40761600 Weak transcription Placenta Amnion Placenta Amnion
27 chr5:40756000-40776000 Weak transcription Aorta Aorta
28 chr5:40756000-40780600 Weak transcription Spleen Spleen
29 chr5:40756200-40756600 Enhancers Primary monocytes fromperipheralblood blood
30 chr5:40756200-40756600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
31 chr5:40756200-40756600 Flanking Active TSS Primary T cells fromperipheralblood blood
32 chr5:40756200-40756600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
33 chr5:40756200-40756600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr5:40756200-40756600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr5:40756200-40756600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr5:40756200-40756600 Flanking Active TSS Adipose Nuclei Adipose
37 chr5:40756200-40756600 Flanking Active TSS Liver Liver
38 chr5:40756200-40756600 Flanking Active TSS Brain Germinal Matrix brain
39 chr5:40756200-40756600 Flanking Active TSS Fetal Heart heart
40 chr5:40756200-40756600 Flanking Active TSS Fetal Muscle Trunk muscle
41 chr5:40756200-40756600 Flanking Active TSS Fetal Stomach stomach
42 chr5:40756200-40756600 Flanking Active TSS Rectal Smooth Muscle rectum
43 chr5:40756200-40756600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
44 chr5:40756200-40756600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
45 chr5:40756200-40756600 Flanking Active TSS Stomach Smooth Muscle stomach
46 chr5:40756200-40756600 Flanking Active TSS HepG2 liver
47 chr5:40756200-40756600 Flanking Active TSS K562 blood
48 chr5:40756200-40756600 Flanking Active TSS Osteobl bone
49 chr5:40756200-40756800 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
50 chr5:40756200-40756800 Flanking Active TSS Dnd41 blood

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