Variant report

Variant	rs2976958
Chromosome Location	chr8:8236677-8236678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8230228..8231802-chr8:8235911..8238856,2	MCF-7	breast:
2	chr8:8235042..8240063-chr8:8240771..8244973,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182319	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10099571	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10101904	1.00[ASN][1000 genomes]
rs10110708	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10503376	1.00[ASN][1000 genomes]
rs13248908	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13259482	1.00[ASN][1000 genomes]
rs17594093	1.00[CHB][hapmap]
rs17604776	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17607697	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17664371	1.00[ASN][1000 genomes]
rs17669632	1.00[ASN][1000 genomes]
rs17670522	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2976956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2979159	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34353415	1.00[ASN][1000 genomes]
rs35144760	1.00[ASN][1000 genomes]
rs35190619	1.00[ASN][1000 genomes]
rs4840966	1.00[ASN][1000 genomes]
rs4840969	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4840970	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4840971	1.00[ASN][1000 genomes]
rs4840975	1.00[ASN][1000 genomes]
rs55817265	1.00[ASN][1000 genomes]
rs60027965	1.00[ASN][1000 genomes]
rs6601693	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs66469655	1.00[ASN][1000 genomes]
rs6991227	1.00[ASN][1000 genomes]
rs6998115	1.00[ASN][1000 genomes]
rs7007943	1.00[ASN][1000 genomes]
rs7014601	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71513198	1.00[ASN][1000 genomes]
rs73184334	1.00[ASN][1000 genomes]
rs73199790	1.00[ASN][1000 genomes]
rs73523411	1.00[ASN][1000 genomes]
rs882687	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817196	chr8:8079861-8255544	Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv465448	chr8:8098079-8403142	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv610152	chr8:8098079-8403142	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv610153	chr8:8098079-8454531	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv610154	chr8:8101641-8328101	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1032259	chr8:8108863-8247113	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1020290	chr8:8108863-8260280	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv539440	chr8:8108863-8260280	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1025994	chr8:8108863-8580201	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1029268	chr8:8130629-8403435	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv539446	chr8:8130629-8403435	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv1030433	chr8:8130629-8653691	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv539447	chr8:8130629-8653691	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
15	nsv831227	chr8:8204838-8367160	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1033463	chr8:8221922-8674333	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
17	nsv539451	chr8:8221922-8674333	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8220400-8237400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:8220400-8241800	Weak transcription	NHDF-Ad	bronchial
3	chr8:8221000-8239800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:8221800-8240000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:8222000-8240600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:8222600-8240000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:8222600-8240200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:8222600-8240400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:8222800-8240000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:8223000-8240000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:8225800-8239800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr8:8226400-8240000	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr8:8226800-8236800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr8:8227600-8239800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:8228200-8239600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:8228400-8240000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:8229000-8239600	Strong transcription	Fetal Muscle Leg	muscle
18	chr8:8229600-8240000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:8229600-8240400	Strong transcription	Primary B cells from cord blood	blood
20	chr8:8229800-8240000	Strong transcription	HSMMtube	muscle
21	chr8:8230200-8241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:8230600-8238600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:8231600-8238000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:8232000-8237600	Strong transcription	HMEC	breast
25	chr8:8232000-8238800	Strong transcription	Fetal Lung	lung
26	chr8:8232000-8240800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:8232000-8241200	Weak transcription	Psoas Muscle	Psoas
28	chr8:8232200-8237400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:8232200-8237400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:8232200-8238800	Weak transcription	Stomach Mucosa	stomach
31	chr8:8232400-8238400	Strong transcription	NHEK	skin
32	chr8:8232600-8237800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:8232600-8239000	Weak transcription	Small Intestine	intestine
34	chr8:8233000-8237400	Strong transcription	Colonic Mucosa	Colon
35	chr8:8233000-8238000	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr8:8233000-8239200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:8233200-8240400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:8233400-8236800	Strong transcription	NH-A	brain
39	chr8:8233400-8237800	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr8:8233400-8239400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr8:8233600-8237000	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr8:8233600-8237400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:8233600-8237400	Strong transcription	Primary T cells from cord blood	blood
44	chr8:8233600-8237400	Strong transcription	Brain Hippocampus Middle	brain
45	chr8:8233600-8237400	Strong transcription	Esophagus	oesophagus
46	chr8:8233600-8237800	Strong transcription	Fetal Stomach	stomach
47	chr8:8233600-8239000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:8233600-8239400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:8233600-8239600	Strong transcription	Brain Germinal Matrix	brain
50	chr8:8233600-8239600	Strong transcription	HUVEC	blood vessel

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