Variant report

Variant	rs2979258
Chromosome Location	chr8:8894700-8894701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11782281	0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17155132	0.89[EUR][1000 genomes]
rs2044388	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs2082210	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs2084076	0.88[YRI][hapmap]
rs2921379	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs2953808	0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs2953809	0.81[EUR][1000 genomes]
rs2979246	0.93[YRI][hapmap]
rs2979260	0.82[YRI][hapmap]
rs4841080	0.87[EUR][1000 genomes]
rs4841085	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs6422353	1.00[CEU][hapmap]
rs73195802	0.89[EUR][1000 genomes]
rs7813388	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs7824140	0.97[AFR][1000 genomes]
rs987537	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:8861800-8897800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:8861800-8915600	Weak transcription	Pancreas	Pancrea
4	chr8:8871200-8900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:8875200-8897200	Weak transcription	Gastric	stomach
6	chr8:8875400-8897000	Weak transcription	Lung	lung
7	chr8:8875400-8901200	Weak transcription	Thymus	Thymus
8	chr8:8876400-8898000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:8877000-8895600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:8877000-8903400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:8877200-8895400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:8881000-8900400	Weak transcription	NH-A	brain
13	chr8:8882200-8896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:8883200-8898400	Weak transcription	Fetal Kidney	kidney
15	chr8:8883600-8902400	Weak transcription	Adipose Nuclei	Adipose
16	chr8:8883800-8895400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:8883800-8897800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:8883800-8906000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:8884000-8895000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:8884000-8900200	Weak transcription	Left Ventricle	heart
21	chr8:8884000-8906200	Weak transcription	Psoas Muscle	Psoas
22	chr8:8884600-8894800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:8884600-8895200	Weak transcription	Liver	Liver
24	chr8:8885800-8895800	Weak transcription	Fetal Lung	lung
25	chr8:8887000-8897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:8887600-8894800	Weak transcription	Brain Substantia Nigra	brain
27	chr8:8887800-8897600	Weak transcription	GM12878-XiMat	blood
28	chr8:8888400-8910800	Weak transcription	Hela-S3	cervix
29	chr8:8889600-8894800	Weak transcription	NHEK	skin
30	chr8:8890400-8897400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:8890800-8895800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr8:8890800-8895800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:8890800-8897400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr8:8890800-8897600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:8891000-8914800	Weak transcription	Fetal Stomach	stomach
36	chr8:8891200-8895400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:8891200-8897000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:8891200-8897600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr8:8891200-8897800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:8891200-8897800	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:8891400-8894800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:8891400-8897000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:8891400-8897000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:8891400-8897600	Weak transcription	Placenta	Placenta
45	chr8:8891400-8897600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr8:8891400-8915200	Weak transcription	K562	blood
47	chr8:8892000-8894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr8:8892000-8895000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:8892000-8895200	Weak transcription	A549	lung
50	chr8:8892000-8901800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links