Variant report

Variant	rs2981142
Chromosome Location	chr8:39856901-39856902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2909325	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2909327	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2909329	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2909330	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2909334	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2955880	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2955881	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2955884	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2955886	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2955887	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2955889	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2981143	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2981144	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2981145	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2981146	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72630566	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72630581	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39850600-39872800	Weak transcription	Right Atrium	heart
2	chr8:39856000-39864600	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links