Variant report

Variant	rs2981180
Chromosome Location	chr8:39895770-39895771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:39895651..39897213-chr8:39897481..39900329,2	MCF-7	breast:
2	chr8:39895627..39896180-chr8:40059316..40060124,2	MCF-7	breast:
3	chr8:39895548..39896463-chr8:40850507..40851494,2	MCF-7	breast:
4	chr8:39895604..39898278-chr8:40014313..40017201,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2955874	1.00[AFR][1000 genomes]
rs4305883	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39891400-39896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:39891400-39898400	Weak transcription	Pancreas	Pancrea
3	chr8:39892600-39896800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:39892600-39896800	Weak transcription	Fetal Lung	lung
5	chr8:39892600-39897800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:39892600-39898200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:39893600-39898400	Weak transcription	Liver	Liver
8	chr8:39893600-39898400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:39893800-39897600	Weak transcription	HepG2	liver
10	chr8:39894200-39897800	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:39894400-39897800	Weak transcription	Hela-S3	cervix
12	chr8:39895000-39900000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:39895200-39896200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:39895200-39896200	Enhancers	HUVEC	blood vessel
15	chr8:39895200-39896400	Enhancers	Fetal Intestine Small	intestine
16	chr8:39895200-39896400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr8:39895400-39895800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr8:39895400-39895800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:39895400-39895800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:39895400-39896000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:39895400-39896000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:39895400-39896000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:39895400-39896200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:39895400-39899600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:39895600-39895800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:39895600-39895800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:39895600-39896000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr8:39895600-39896000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:39895600-39896000	Enhancers	Fetal Kidney	kidney
30	chr8:39895600-39896200	Enhancers	A549	lung
31	chr8:39895600-39897400	Weak transcription	Fetal Intestine Large	intestine

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