Variant report

Variant	rs2981276
Chromosome Location	chr8:61561306-61561307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61545345..61549170-chr8:61560322..61564526,3	K562	blood:
2	chr8:61559948..61562739-chr8:61935074..61937781,2	K562	blood:
3	chr8:61547670..61550655-chr8:61559600..61561822,2	K562	blood:
4	chr8:61559414..61562371-chr8:61591268..61592916,2	K562	blood:
5	chr8:61559343..61568621-chr8:61588061..61597189,35	MCF-7	breast:
6	chr8:61428155..61432658-chr8:61561209..61565927,6	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CA8-5	chr8:61558738-61564811	NONHSAT126845
2	lnc-CA8-5	chr8:61560545-61561673	NONHSAT126846

No data

No data

Variant related genes	Relation type
ENSG00000228862	Chromatin interaction
ENSG00000251396	Chromatin interaction
ENSG00000104388	Chromatin interaction
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16926277	1.00[CHB][hapmap]
rs2930039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2946152	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2981278	1.00[ASN][1000 genomes]
rs57578368	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61433442	1.00[ASN][1000 genomes]
rs61517679	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61701788	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6985208	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6990401	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016550	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv824657	chr8:61555227-61626758	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61554200-61564000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:61556600-61563200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:61558800-61563600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:61558800-61563600	Weak transcription	Left Ventricle	heart
5	chr8:61559200-61563200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:61559200-61563400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:61559200-61563600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:61559400-61563400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:61559800-61563600	Weak transcription	Fetal Brain Male	brain
10	chr8:61560200-61563000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:61560600-61563000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:61560800-61563600	Weak transcription	Right Ventricle	heart
13	chr8:61561200-61563200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:61561200-61563600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links