Variant report

Variant	rs2982465
Chromosome Location	chr1:169014975-169014976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1320973	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169010000-169015000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:169011800-169017400	Weak transcription	Brain Substantia Nigra	brain
3	chr1:169011800-169017800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:169011800-169028800	Weak transcription	Psoas Muscle	Psoas
5	chr1:169012000-169017400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:169012000-169018200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:169012400-169015400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:169012400-169015400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr1:169012400-169015600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:169012600-169015400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:169012600-169015400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:169012600-169015400	Enhancers	Fetal Thymus	thymus
13	chr1:169012600-169015600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:169012600-169017800	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:169012800-169019400	Enhancers	GM12878-XiMat	blood
16	chr1:169013000-169015000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:169013000-169018200	Enhancers	Stomach Mucosa	stomach
18	chr1:169013200-169018400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr1:169013800-169015400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:169013800-169016000	Weak transcription	Gastric	stomach
21	chr1:169013800-169016600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:169014400-169015400	Enhancers	Fetal Muscle Leg	muscle
23	chr1:169014400-169015400	Enhancers	Small Intestine	intestine
24	chr1:169014600-169015200	Weak transcription	Colonic Mucosa	Colon
25	chr1:169014600-169015400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr1:169014600-169015400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr1:169014600-169015400	Flanking Active TSS	Dnd41	blood
28	chr1:169014600-169015600	Enhancers	Primary T cells from cord blood	blood
29	chr1:169014600-169016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:169014600-169016400	Weak transcription	Lung	lung
31	chr1:169014800-169015000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:169014800-169016600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr1:169014800-169017400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links