Variant report

Variant	rs2982908
Chromosome Location	chr6:163583673-163583674
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2747687	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2747688	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6455867	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762628	chr6:163572148-163620903	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163570400-163590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:163574000-163586200	Weak transcription	Fetal Brain Female	brain
3	chr6:163576400-163583800	Weak transcription	Fetal Brain Male	brain
4	chr6:163578600-163583800	Weak transcription	Left Ventricle	heart
5	chr6:163581600-163584000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:163582000-163586600	Enhancers	Brain Substantia Nigra	brain
7	chr6:163582800-163584200	Enhancers	Brain Angular Gyrus	brain
8	chr6:163583000-163584200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:163583000-163584400	Flanking Active TSS	Liver	Liver
10	chr6:163583000-163584400	Enhancers	Pancreas	Pancrea
11	chr6:163583000-163584600	Enhancers	Brain Anterior Caudate	brain
12	chr6:163583200-163584000	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr6:163583200-163584000	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr6:163583200-163584600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:163583400-163584200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:163583600-163584000	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr6:163583600-163584000	Enhancers	Fetal Heart	heart
18	chr6:163583600-163584200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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