Variant report

Variant	rs2983373
Chromosome Location	chr10:52269262-52269263
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52268790..52270873-chr10:52275061..52278786,3	MCF-7	breast:
2	chr10:52261680..52263393-chr10:52269137..52270888,2	MCF-7	breast:
3	chr10:52269188..52271460-chr10:52277484..52280153,2	MCF-7	breast:
4	chr10:52264079..52265677-chr10:52268194..52270152,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1203423	1.00[AFR][1000 genomes]
rs3011774	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv895391	chr10:52260398-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv895392	chr10:52263910-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv467193	chr10:52265265-52289664	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv550855	chr10:52265265-52289664	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52247000-52271200	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:52258000-52271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:52261800-52271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:52262000-52270800	Weak transcription	HSMMtube	muscle
5	chr10:52262200-52271200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:52262200-52287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:52262400-52270600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:52262400-52271800	Weak transcription	Fetal Stomach	stomach
9	chr10:52262400-52272600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:52262600-52271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:52262800-52273000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:52263800-52271400	Weak transcription	Placenta	Placenta
13	chr10:52263800-52271800	Weak transcription	Esophagus	oesophagus
14	chr10:52264200-52270800	Weak transcription	K562	blood
15	chr10:52264400-52269600	Weak transcription	Hela-S3	cervix
16	chr10:52264600-52271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:52264800-52271000	Weak transcription	NHEK	skin
18	chr10:52265000-52271200	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:52265000-52272400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr10:52265400-52270000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:52265400-52270400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr10:52265400-52273200	Enhancers	Brain Angular Gyrus	brain
23	chr10:52266200-52272800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:52266400-52272800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:52266400-52272800	Enhancers	HepG2	liver
26	chr10:52266800-52271200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:52266800-52282400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:52267000-52272400	Weak transcription	Thymus	Thymus
29	chr10:52267000-52273400	Enhancers	Brain Substantia Nigra	brain
30	chr10:52267000-52282400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:52267400-52269600	Enhancers	Small Intestine	intestine
32	chr10:52267400-52271000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:52267400-52271800	Weak transcription	Lung	lung
34	chr10:52267400-52273600	Enhancers	Brain Hippocampus Middle	brain
35	chr10:52267600-52269400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:52267600-52270800	Weak transcription	Fetal Heart	heart
37	chr10:52267600-52271000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:52267600-52272400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr10:52267600-52273000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:52267600-52273000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:52267600-52277800	Enhancers	Brain Anterior Caudate	brain
42	chr10:52267800-52270000	Enhancers	Fetal Intestine Large	intestine
43	chr10:52267800-52271600	Weak transcription	Ovary	ovary
44	chr10:52268000-52269400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:52268000-52270000	Enhancers	Liver	Liver
46	chr10:52268000-52273200	Enhancers	Stomach Mucosa	stomach
47	chr10:52268200-52270200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:52268200-52270800	Weak transcription	Right Ventricle	heart
49	chr10:52268200-52271000	Weak transcription	Left Ventricle	heart
50	chr10:52268200-52271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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