Variant report

Variant	rs2984604
Chromosome Location	chr1:168926479-168926480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2419685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2900886	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2984603	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2984605	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2984606	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2984608	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2984609	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2984610	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2984612	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3007398	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7514682	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7526462	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168922200-168928800	Weak transcription	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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