Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13178605	0.86[EUR][1000 genomes]
rs298552	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4701683	0.86[EUR][1000 genomes]
rs4701684	0.86[EUR][1000 genomes]
rs4701685	0.86[EUR][1000 genomes]
rs4702207	0.86[EUR][1000 genomes]
rs4702208	0.86[EUR][1000 genomes]
rs6554994	0.86[EUR][1000 genomes]
rs6554995	0.84[EUR][1000 genomes]
rs6554996	0.86[EUR][1000 genomes]
rs6554997	0.86[EUR][1000 genomes]
rs6554998	0.86[EUR][1000 genomes]
rs6861179	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6887129	0.86[EUR][1000 genomes]
rs6892106	0.86[EUR][1000 genomes]
rs7705848	0.84[EUR][1000 genomes]
rs7706156	0.86[EUR][1000 genomes]
rs7715898	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727410	0.86[EUR][1000 genomes]
rs7733712	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv461988	chr5:17296342-17484038	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv597313	chr5:17296342-17484038	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv830219	chr5:17325802-17518914	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17333000-17336000	Weak transcription	Placenta	Placenta

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