Variant report

Variant	rs2985922
Chromosome Location	chr13:67748137-67748138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2985924	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2985925	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2987328	1.00[AMR][1000 genomes]
rs2987329	1.00[AMR][1000 genomes]
rs2987331	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2987333	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2987334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3013560	1.00[AMR][1000 genomes]
rs3013644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731000-67751600	Weak transcription	Brain Anterior Caudate	brain
2	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
3	chr13:67735800-67748600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:67735800-67749200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:67744200-67748400	Weak transcription	Brain Angular Gyrus	brain
6	chr13:67747600-67748200	Enhancers	Brain Hippocampus Middle	brain
7	chr13:67747800-67749800	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links