Variant report

Variant	rs298609
Chromosome Location	chr8:130886595-130886596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130884702..130887738-chr8:130891037..130893861,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10956502	0.87[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs11984804	0.85[ASN][1000 genomes]
rs167238	0.92[CEU][hapmap];0.88[ASN][1000 genomes]
rs167239	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16904166	0.83[CHB][hapmap];0.86[CHD][hapmap];0.85[ASN][1000 genomes]
rs1979477	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2046260	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2054632	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs212992	0.93[ASN][1000 genomes]
rs2306528	0.87[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs2449415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap]
rs2449417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2663613	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663618	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2663619	0.86[ASN][1000 genomes]
rs298601	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.92[YRI][hapmap]
rs298602	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs298604	0.92[CEU][hapmap];0.92[YRI][hapmap];0.88[ASN][1000 genomes]
rs298605	0.88[ASN][1000 genomes]
rs298606	0.88[ASN][1000 genomes]
rs298607	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs298610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs298611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs298612	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs298613	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs298614	0.94[ASN][1000 genomes]
rs298615	0.95[ASN][1000 genomes]
rs298616	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs298617	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs298618	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs298619	0.92[CEU][hapmap];0.88[ASN][1000 genomes]
rs298620	0.86[ASN][1000 genomes]
rs2989885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs367117	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs383209	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs384752	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs385022	0.92[CEU][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs389604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs401526	0.94[ASN][1000 genomes]
rs412941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs423915	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs438877	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4395866	0.85[ASN][1000 genomes]
rs476849	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59839253	0.84[ASN][1000 genomes]
rs710616	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs710617	0.86[ASN][1000 genomes]
rs837065	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs837075	0.90[ASN][1000 genomes]
rs837079	0.85[ASN][1000 genomes]
rs837080	0.92[CEU][hapmap];0.93[ASN][1000 genomes]
rs837081	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs857233	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130863600-130886800	Weak transcription	Fetal Lung	lung
2	chr8:130864400-130903600	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:130864600-130888200	Weak transcription	Small Intestine	intestine
4	chr8:130864800-130898200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:130865000-130897400	Weak transcription	Psoas Muscle	Psoas
6	chr8:130865200-130887200	Weak transcription	Fetal Kidney	kidney
7	chr8:130865200-130897600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:130865400-130899200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:130865600-130907600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:130866000-130894800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:130866400-130891600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:130868000-130891400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:130869800-130895800	Weak transcription	HepG2	liver
14	chr8:130869800-130897600	Weak transcription	Brain Angular Gyrus	brain
15	chr8:130871200-130887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:130871200-130896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:130873600-130895600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:130873800-130887600	Weak transcription	Fetal Stomach	stomach
19	chr8:130874000-130899000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:130874200-130886800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:130874600-130897600	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:130875200-130897400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:130875800-130899400	Weak transcription	Fetal Intestine Large	intestine
24	chr8:130877000-130886800	Weak transcription	NH-A	brain
25	chr8:130877200-130897400	Weak transcription	Fetal Intestine Small	intestine
26	chr8:130877200-130898800	Weak transcription	Lung	lung
27	chr8:130881800-130886800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr8:130881800-130887800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr8:130882000-130887600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr8:130882600-130887000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:130882600-130888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:130882600-130889400	Weak transcription	K562	blood
33	chr8:130882800-130887200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:130882800-130887600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:130882800-130896000	Weak transcription	Pancreas	Pancrea
36	chr8:130882800-130897600	Weak transcription	Right Ventricle	heart
37	chr8:130882800-130898800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:130883000-130886600	Weak transcription	NHEK	skin
39	chr8:130883000-130887200	Weak transcription	NHLF	lung
40	chr8:130883000-130887800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr8:130883000-130888000	Weak transcription	Aorta	Aorta
42	chr8:130883000-130891400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr8:130883000-130895600	Weak transcription	Fetal Muscle Leg	muscle
44	chr8:130883000-130897400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:130883000-130897400	Weak transcription	Gastric	stomach
46	chr8:130883000-130897400	Weak transcription	Thymus	Thymus
47	chr8:130883000-130897800	Weak transcription	Esophagus	oesophagus
48	chr8:130883000-130897800	Weak transcription	Spleen	Spleen
49	chr8:130883200-130886800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr8:130883200-130891600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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