Variant report

Variant	rs298717
Chromosome Location	chr9:94094929-94094930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94093731..94095703-chr9:94099628..94102082,2	K562	blood:
2	chr9:94094684..94097540-chr9:94102093..94106003,3	K562	blood:
3	chr9:94093775..94096685-chr9:94097839..94101388,3	MCF-7	breast:
4	chr9:94093836..94095877-chr9:94184508..94187157,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1615811	0.88[AMR][1000 genomes]
rs2457715	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs298721	0.85[AMR][1000 genomes]
rs4744042	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94033800-94096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:94052000-94119200	Weak transcription	Small Intestine	intestine
3	chr9:94053400-94103800	Weak transcription	HSMMtube	muscle
4	chr9:94059600-94103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:94059800-94101400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:94065400-94101400	Weak transcription	K562	blood
7	chr9:94065600-94102000	Weak transcription	Hela-S3	cervix
8	chr9:94066400-94103400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:94066800-94104000	Weak transcription	HSMM	muscle
10	chr9:94069200-94096200	Weak transcription	Psoas Muscle	Psoas
11	chr9:94072800-94101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:94074600-94103800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:94075800-94104200	Weak transcription	NHEK	skin
14	chr9:94080800-94101000	Weak transcription	Fetal Kidney	kidney
15	chr9:94080800-94102400	Weak transcription	Colonic Mucosa	Colon
16	chr9:94081000-94101000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:94082200-94095000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:94082200-94104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:94084400-94104200	Weak transcription	NHDF-Ad	bronchial
20	chr9:94087800-94103600	Weak transcription	A549	lung
21	chr9:94088600-94099800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:94089200-94095000	Weak transcription	Stomach Mucosa	stomach
23	chr9:94090000-94095000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:94090000-94103400	Weak transcription	Brain Angular Gyrus	brain
25	chr9:94090200-94095000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:94090200-94099600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:94090200-94101400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr9:94090200-94104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:94090200-94106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:94090400-94095000	Weak transcription	Lung	lung
31	chr9:94090400-94095000	Weak transcription	Pancreas	Pancrea
32	chr9:94090400-94095200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr9:94090400-94096400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:94090400-94099400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:94090400-94099600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr9:94090400-94100600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:94090400-94101000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:94090400-94101400	Weak transcription	Brain Anterior Caudate	brain
39	chr9:94090400-94101400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr9:94090400-94103400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:94090400-94103400	Weak transcription	Gastric	stomach
42	chr9:94090400-94104000	Weak transcription	NHLF	lung
43	chr9:94090400-94104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:94090400-94104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:94090400-94104200	Weak transcription	Aorta	Aorta
46	chr9:94090400-94104200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr9:94090400-94104200	Weak transcription	Esophagus	oesophagus
48	chr9:94090600-94095000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:94090600-94095000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:94090600-94100000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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