Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12132502	0.80[AMR][1000 genomes]
rs2245672	0.84[AMR][1000 genomes]
rs2246145	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2246484	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2246485	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2249409	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2249933	0.80[AMR][1000 genomes]
rs2250174	0.83[AMR][1000 genomes]
rs2250193	0.83[AMR][1000 genomes]
rs2250304	0.83[AMR][1000 genomes]
rs2265239	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2265240	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2265242	0.84[AMR][1000 genomes]
rs2481073	0.83[AMR][1000 genomes]
rs2483140	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2779801	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2990694	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3007155	0.81[AMR][1000 genomes]
rs6427563	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6427571	0.80[AMR][1000 genomes]
rs6677533	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv548058	chr1:160925455-160989614	Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2988722	F11R	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160942200-160944400	Weak transcription	GM12878-XiMat	blood
2	chr1:160942800-160946200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:160943200-160951000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:160943200-160959800	Weak transcription	Pancreas	Pancrea
5	chr1:160943600-160949200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:160943800-160950600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:160944000-160950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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