Variant report

Variant	rs29977
Chromosome Location	chr5:52046127-52046128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12332623	0.88[ASN][1000 genomes]
rs1626287	0.91[ASN][1000 genomes]
rs1645393	0.91[ASN][1000 genomes]
rs1645394	0.91[ASN][1000 genomes]
rs164611	0.89[ASN][1000 genomes]
rs164612	0.88[ASN][1000 genomes]
rs1668506	0.91[ASN][1000 genomes]
rs244481	1.00[ASN][1000 genomes]
rs244491	0.94[ASN][1000 genomes]
rs244493	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs244495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29976	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29980	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29982	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351933	0.91[ASN][1000 genomes]
rs351937	0.91[ASN][1000 genomes]
rs351940	0.88[ASN][1000 genomes]
rs39811	0.86[ASN][1000 genomes]
rs599698	0.90[ASN][1000 genomes]
rs651393	0.89[ASN][1000 genomes]
rs657796	0.90[ASN][1000 genomes]
rs658771	0.90[ASN][1000 genomes]
rs664248	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027410	chr5:52022713-52103360	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52042800-52046600	Weak transcription	Fetal Lung	lung
2	chr5:52043000-52047600	Weak transcription	Hela-S3	cervix
3	chr5:52045400-52046400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:52045400-52046400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:52046000-52046400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:52046000-52046400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:52046000-52046400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:52046000-52047400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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