Variant report

Variant	rs299822
Chromosome Location	chr17:63141298-63141299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63133396..63138666-chr17:63139121..63145017,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108370	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs167262	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585860	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs299823	0.81[EUR][1000 genomes]
rs299824	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34821848	1.00[ASN][1000 genomes]
rs419526	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs438914	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451403	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1009898	chr17:63135734-63146723	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63143000	Weak transcription	Spleen	Spleen
2	chr17:63134400-63143200	Weak transcription	Esophagus	oesophagus
3	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
4	chr17:63135800-63146800	Weak transcription	Thymus	Thymus
5	chr17:63136000-63142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:63138600-63151200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr17:63139400-63143000	Weak transcription	GM12878-XiMat	blood
8	chr17:63140200-63142200	Enhancers	Fetal Thymus	thymus
9	chr17:63140400-63142800	Weak transcription	Brain Hippocampus Middle	brain
10	chr17:63140800-63143000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr17:63140800-63143000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:63140800-63143000	Weak transcription	Lung	lung
13	chr17:63140800-63143000	Weak transcription	Ovary	ovary
14	chr17:63140800-63143200	Weak transcription	Brain Angular Gyrus	brain
15	chr17:63141000-63141400	Weak transcription	Fetal Kidney	kidney
16	chr17:63141000-63142000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:63141000-63142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:63141000-63143000	Weak transcription	Brain Anterior Caudate	brain
19	chr17:63141000-63143000	Weak transcription	Brain Substantia Nigra	brain
20	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr17:63141200-63142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr17:63141200-63143000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:63141200-63143000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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