Variant report

Variant	rs3000795
Chromosome Location	chr1:227600071-227600072
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10082258	0.85[AMR][1000 genomes]
rs3000778	0.85[AMR][1000 genomes]
rs3000779	0.85[AMR][1000 genomes]
rs3000781	0.83[AMR][1000 genomes]
rs3000782	0.83[AMR][1000 genomes]
rs3000783	0.83[AMR][1000 genomes]
rs3000784	0.85[AMR][1000 genomes]
rs3000785	0.85[AMR][1000 genomes]
rs3000786	0.85[AMR][1000 genomes]
rs3000788	0.85[AMR][1000 genomes]
rs3000792	0.85[AMR][1000 genomes]
rs3000794	0.83[AMR][1000 genomes]
rs3000796	0.85[AMR][1000 genomes]
rs3000797	0.85[AMR][1000 genomes]
rs3000798	0.85[AMR][1000 genomes]
rs3000806	0.83[AMR][1000 genomes]
rs3000807	0.83[AMR][1000 genomes]
rs3000809	0.82[AMR][1000 genomes]
rs3000811	0.81[AMR][1000 genomes]
rs3014278	0.81[AMR][1000 genomes]
rs3014287	0.85[AMR][1000 genomes]
rs3014288	0.85[AMR][1000 genomes]
rs3014290	0.85[AMR][1000 genomes]
rs3014291	0.85[AMR][1000 genomes]
rs3014292	0.85[AMR][1000 genomes]
rs3014293	0.85[AMR][1000 genomes]
rs3014295	0.85[AMR][1000 genomes]
rs3014296	0.85[AMR][1000 genomes]
rs3014297	0.85[AMR][1000 genomes]
rs3014298	0.85[AMR][1000 genomes]
rs3014299	0.85[AMR][1000 genomes]
rs3014300	0.82[AMR][1000 genomes]
rs3014301	0.81[AMR][1000 genomes]
rs3122560	0.81[AMR][1000 genomes]
rs3122561	0.81[AMR][1000 genomes]
rs3125124	0.81[AMR][1000 genomes]
rs4468130	0.85[AMR][1000 genomes]
rs4570389	0.85[AMR][1000 genomes]
rs9426519	0.82[AMR][1000 genomes]
rs9426520	0.82[AMR][1000 genomes]
rs9426521	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1001353	chr1:227474785-227660691	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1003278	chr1:227563126-227678464	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv873243	chr1:227581017-227617519	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227599200-227603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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