Variant report

Variant	rs300405
Chromosome Location	chr2:142020163-142020164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12465020	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12473777	1.00[CEU][hapmap]
rs12995803	1.00[CEU][hapmap]
rs13018371	1.00[CEU][hapmap]
rs1850695	0.80[CEU][hapmap]
rs300342	0.86[CEU][hapmap]
rs300346	1.00[CEU][hapmap]
rs300350	1.00[CEU][hapmap]
rs300367	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs300374	1.00[JPT][hapmap]
rs300375	1.00[JPT][hapmap]
rs300378	1.00[JPT][hapmap]
rs300386	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs300388	1.00[JPT][hapmap]
rs300389	1.00[JPT][hapmap]
rs300392	1.00[JPT][hapmap]
rs300400	1.00[CEU][hapmap]
rs300409	0.97[EUR][1000 genomes]
rs35784032	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs397078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs418443	0.80[CEU][hapmap]
rs424973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs436749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71417136	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1010724	chr2:142014854-142023254	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links