Variant report

Variant	rs3010289
Chromosome Location	chr6:139803943-139803944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139797780..139799711-chr6:139803256..139805008,2	K562	blood:
2	chr6:139795946..139798274-chr6:139802764..139804469,2	MCF-7	breast:
3	chr6:139797780..139800668-chr6:139802147..139805671,5	K562	blood:
4	chr6:139801890..139804566-chr6:139874665..139876366,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1159968	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2908508	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3010291	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3010292	1.00[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3010293	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3010294	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3010295	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3010296	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3010298	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139796800-139806600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:139797000-139806800	Weak transcription	Fetal Lung	lung
3	chr6:139800200-139804000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:139800200-139804400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:139800400-139804400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:139800600-139804600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:139800600-139805200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:139800800-139804400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:139800800-139805200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:139800800-139805200	Enhancers	Liver	Liver
11	chr6:139801000-139804600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:139802400-139804000	Enhancers	HepG2	liver
13	chr6:139802400-139807400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:139802600-139804600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:139802800-139804000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:139802800-139804200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:139803000-139804000	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:139803000-139804000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:139803000-139805200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:139803200-139804000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:139803200-139804000	Enhancers	Fetal Kidney	kidney
22	chr6:139803400-139804000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:139803400-139804000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr6:139803400-139804600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:139803400-139804600	Enhancers	H9 Cell Line	embryonic stem cell
26	chr6:139803400-139804600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:139803400-139804600	Enhancers	K562	blood
28	chr6:139803600-139804000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:139803600-139804200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:139803800-139804000	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:139803800-139804200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:139803800-139804200	Weak transcription	Fetal Stomach	stomach
33	chr6:139803800-139806600	Weak transcription	Fetal Heart	heart
34	chr6:139803800-139807400	Weak transcription	Ovary	ovary

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