Variant report

Variant	rs301129
Chromosome Location	chr4:53794192-53794193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs301096	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs301113	0.88[ASW][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs301115	0.84[LWK][hapmap]
rs301120	0.92[AFR][1000 genomes]
rs301125	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs301126	0.84[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.87[AMR][1000 genomes]
rs301127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs301128	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs301130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs301131	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs301132	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs301134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs443054	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:53729200-53807800	Weak transcription	Esophagus	oesophagus
2	chr4:53734600-53822400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:53768800-53815600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:53769000-53804400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:53774600-53798400	Weak transcription	HSMMtube	muscle
6	chr4:53782200-53799000	Weak transcription	NHLF	lung
7	chr4:53782400-53794600	Weak transcription	Fetal Stomach	stomach
8	chr4:53782400-53797200	Weak transcription	Liver	Liver
9	chr4:53785600-53798400	Weak transcription	NHDF-Ad	bronchial
10	chr4:53786600-53861400	Weak transcription	Primary B cells from cord blood	blood
11	chr4:53786800-53799000	Weak transcription	Primary T cells from cord blood	blood
12	chr4:53790200-53799400	Weak transcription	Left Ventricle	heart
13	chr4:53791600-53795800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:53791600-53795800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:53792200-53798600	Weak transcription	NH-A	brain
16	chr4:53792200-53798800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:53792200-53799000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:53792600-53797200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:53792600-53797200	Weak transcription	Stomach Mucosa	stomach
20	chr4:53792600-53797600	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:53793000-53797200	Weak transcription	Fetal Intestine Large	intestine
22	chr4:53793000-53797200	Weak transcription	Fetal Intestine Small	intestine
23	chr4:53793000-53797200	Weak transcription	Pancreas	Pancrea
24	chr4:53793000-53797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:53793000-53797600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:53793000-53797600	Weak transcription	Gastric	stomach
27	chr4:53793000-53798800	Weak transcription	Fetal Lung	lung
28	chr4:53793000-53799000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:53793000-53799000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:53793000-53805600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:53793200-53794800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:53793200-53797200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:53793800-53794600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:53794000-53797200	Weak transcription	Fetal Heart	heart
35	chr4:53794000-53798800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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