Variant report

Variant	rs3014829
Chromosome Location	chr1:153408213-153408214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:153407055..153408752-chr1:153409136..153411597,2	MCF-7	breast:
2	chr1:153407654..153409258-chr1:153416471..153419018,2	K562	blood:
3	chr1:153404704..153408499-chr1:153408737..153412962,4	K562	blood:

Variant related genes	Relation type
ENSG00000197364	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1359627	0.83[ASN][1000 genomes]
rs1555886	0.82[ASN][1000 genomes]
rs16835341	0.81[ASN][1000 genomes]
rs16835343	0.81[ASN][1000 genomes]
rs1853956	0.82[ASN][1000 genomes]
rs1998844	0.85[ASN][1000 genomes]
rs2026563	0.81[ASN][1000 genomes]
rs2986206	0.85[ASN][1000 genomes]
rs2986210	0.83[ASN][1000 genomes]
rs2986214	0.82[ASN][1000 genomes]
rs3006426	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3006428	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3006429	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3006430	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3006433	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3006438	0.85[ASN][1000 genomes]
rs3014831	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3014832	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3014833	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3014835	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3014836	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3014838	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3014839	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3014843	0.82[ASN][1000 genomes]
rs3014845	0.82[ASN][1000 genomes]
rs3014849	0.81[ASN][1000 genomes]
rs3125233	0.81[ASN][1000 genomes]
rs6587742	0.81[ASN][1000 genomes]
rs875501	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9435988	0.87[ASN][1000 genomes]
rs9633411	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv831603	chr1:153405842-153576143	Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153404000-153413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:153407600-153409600	Enhancers	K562	blood

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