Variant report

Variant	rs3018061
Chromosome Location	chr4:107287070-107287071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107287024..107287560-chr5:153670760..153671260,2	Hela-S3	cervix:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11938792	0.87[EUR][1000 genomes]
rs2691805	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2949626	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2949645	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2949646	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2949647	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018059	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3018060	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018062	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018063	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018064	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3018065	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109959	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107270800-107290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:107285200-107288600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:107285400-107287800	Enhancers	NHLF	lung
4	chr4:107285400-107287800	Enhancers	Osteobl	bone
5	chr4:107285400-107288400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:107285400-107288400	Enhancers	HSMM	muscle
7	chr4:107285600-107287600	Enhancers	HSMMtube	muscle
8	chr4:107285600-107287800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:107285800-107288200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:107286200-107287400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr4:107286200-107287400	Enhancers	HepG2	liver
12	chr4:107286200-107287600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:107286200-107287800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:107286200-107287800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:107286200-107287800	Enhancers	HUVEC	blood vessel
16	chr4:107286200-107288800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:107286400-107287200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr4:107286400-107287400	Enhancers	Adipose Nuclei	Adipose
19	chr4:107286400-107287400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:107286400-107287400	Enhancers	A549	lung
21	chr4:107286400-107287600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr4:107286400-107287600	Enhancers	NHEK	skin
23	chr4:107286600-107287200	Enhancers	Fetal Heart	heart
24	chr4:107286600-107287200	Weak transcription	Fetal Intestine Large	intestine
25	chr4:107286600-107287400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:107286600-107287400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr4:107286600-107287400	Enhancers	Rectal Smooth Muscle	rectum
28	chr4:107286600-107287400	Enhancers	Hela-S3	cervix
29	chr4:107286600-107287600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:107286600-107287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:107286600-107287800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:107286600-107287800	Enhancers	HMEC	breast
33	chr4:107286800-107287200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:107286800-107287200	Enhancers	Colon Smooth Muscle	Colon
35	chr4:107286800-107287400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr4:107287000-107287200	Enhancers	Duodenum Mucosa	Duodenum
37	chr4:107287000-107287200	Enhancers	Left Ventricle	heart
38	chr4:107287000-107287200	Enhancers	Psoas Muscle	Psoas
39	chr4:107287000-107287200	Flanking Active TSS	NH-A	brain
40	chr4:107287000-107287400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:107287000-107287400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:107287000-107287400	Enhancers	Right Ventricle	heart
43	chr4:107287000-107287400	Enhancers	Stomach Smooth Muscle	stomach
44	chr4:107287000-107287400	Flanking Active TSS	NHDF-Ad	bronchial
45	chr4:107287000-107287600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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