Variant report

Variant	rs3018451
Chromosome Location	chr8:103581633-103581634
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103581063..103582637-chr8:103818696..103820480,2	K562	blood:
2	chr8:103568483..103570807-chr8:103581196..103582779,2	MCF-7	breast:
3	chr8:103580978..103581813-chr8:103597608..103598166,3	MCF-7	breast:
4	chr8:103579195..103580787-chr8:103581193..103583855,2	K562	blood:
5	chr8:103575313..103581780-chr8:103582663..103591933,12	MCF-7	breast:
6	chr8:103580000..103581988-chr8:103595356..103597962,2	K562	blood:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10091076	0.86[CEU][hapmap]
rs2436972	0.86[EUR][1000 genomes]
rs2436973	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv1831575	chr8:103498317-103585093	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1838972	chr8:103498317-103585093	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv534151	chr8:103563857-103589862	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
9	esv1796657	chr8:103581213-103585093	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103550800-103589000	Weak transcription	Right Atrium	heart
2	chr8:103557200-103582000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:103578800-103584600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:103579600-103581800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:103579800-103582200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr8:103580000-103581800	Enhancers	Spleen	Spleen
7	chr8:103580600-103582200	Enhancers	K562	blood
8	chr8:103580800-103581800	Enhancers	GM12878-XiMat	blood
9	chr8:103580800-103584600	Weak transcription	Osteobl	bone
10	chr8:103581000-103581800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:103581000-103581800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:103581200-103581800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:103581200-103581800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:103581200-103581800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:103581200-103582000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:103581400-103581800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:103581400-103581800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:103581400-103581800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:103581400-103581800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:103581400-103581800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:103581400-103581800	Enhancers	Adipose Nuclei	Adipose
22	chr8:103581400-103581800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr8:103581600-103582200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr8:103581600-103582200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:103581600-103585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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