Variant report

Variant	rs3018483
Chromosome Location	chr11:77223415-77223416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77182486..77185869-chr11:77221249..77224117,3	MCF-7	breast:
2	chr11:77217776..77219382-chr11:77221170..77223506,2	MCF-7	breast:
3	chr11:77221408..77223531-chr11:77224188..77226566,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268635	Chromatin interaction
ENSG00000149269	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3018482	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3018484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019255	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133460	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2752651	chr11:77211136-77318279	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77218600-77224800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:77221200-77225000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:77221600-77226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:77221600-77226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:77222000-77223800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:77222000-77224000	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:77222000-77225000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:77222200-77224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:77222200-77224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:77222400-77223600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:77222400-77223800	Enhancers	Primary B cells from cord blood	blood
12	chr11:77222600-77223600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:77222600-77226600	Weak transcription	HMEC	breast
14	chr11:77222800-77223600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:77222800-77224600	Weak transcription	Stomach Mucosa	stomach
16	chr11:77223000-77226400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:77223200-77227000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:77223200-77240600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:77223400-77224200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr11:77223400-77229000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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