Variant report

Variant	rs3018703
Chromosome Location	chr11:101482840-101482841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1938840	0.81[EUR][1000 genomes]
rs2154996	0.81[EUR][1000 genomes]
rs2154997	0.81[EUR][1000 genomes]
rs2508244	0.81[EUR][1000 genomes]
rs2508246	0.81[EUR][1000 genomes]
rs2508251	0.81[EUR][1000 genomes]
rs2508252	0.81[EUR][1000 genomes]
rs2508254	0.81[EUR][1000 genomes]
rs2508725	0.81[EUR][1000 genomes]
rs2508726	0.81[EUR][1000 genomes]
rs2508727	0.81[EUR][1000 genomes]
rs2508728	0.81[EUR][1000 genomes]
rs2508729	0.81[EUR][1000 genomes]
rs2513191	0.81[EUR][1000 genomes]
rs3018706	0.80[EUR][1000 genomes]
rs3018707	0.81[EUR][1000 genomes]
rs947992	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101481200-101483400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:101481200-101483800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:101481200-101489800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:101481400-101483200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:101481400-101483200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:101481400-101483400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:101481400-101483400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:101481400-101484000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:101481400-101487600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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