Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:93055055..93056889-chr11:93058671..93061628,2	K562	blood:
2	chr11:93060266..93062077-chr11:93064556..93067228,3	K562	blood:
3	chr11:93058763..93061728-chr11:93061851..93065338,6	K562	blood:

Variant related genes	Relation type
ENSG00000165325	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs3019208	0.83[EUR][1000 genomes]
rs3019209	0.82[EUR][1000 genomes]
rs3019211	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3019212	0.83[EUR][1000 genomes]
rs3019213	0.83[EUR][1000 genomes]
rs3020050	0.83[EUR][1000 genomes]
rs3020052	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020053	0.83[EUR][1000 genomes]
rs3020054	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020061	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020062	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020065	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020066	0.83[EUR][1000 genomes]
rs3020067	0.83[EUR][1000 genomes]
rs3020069	0.83[EUR][1000 genomes]
rs3133444	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133454	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753450	0.82[AFR][1000 genomes]
rs6483233	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118644	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv438	chr11:93034411-93080513	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898180	chr11:93045561-93082053	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3020064	CCDC67	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93051200-93063000	Weak transcription	Pancreas	Pancrea
2	chr11:93057400-93063000	Weak transcription	K562	blood
3	chr11:93060800-93061000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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