Variant report

Variant	rs3024830
Chromosome Location	chr2:85884644-85884645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85884543..85886105-chr2:85886734..85889252,2	MCF-7	breast:
2	chr2:85871308..85872948-chr2:85883878..85886209,2	K562	blood:
3	chr2:85883102..85885218-chr2:85885321..85888097,2	K562	blood:

Variant related genes	Relation type
ENSG00000168883	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3024824	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874459	chr2:85828014-85939207	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874460	chr2:85828014-85941074	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874461	chr2:85853653-85939207	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv874462	chr2:85853653-85941074	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85845400-85886400	Strong transcription	Fetal Muscle Leg	muscle
2	chr2:85846000-85887000	Strong transcription	Liver	Liver
3	chr2:85846000-85887400	Strong transcription	Fetal Intestine Small	intestine
4	chr2:85846200-85889400	Strong transcription	Thymus	Thymus
5	chr2:85862000-85887200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:85873200-85886600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:85876400-85888800	Weak transcription	Fetal Heart	heart
8	chr2:85876400-85888800	Weak transcription	Right Atrium	heart
9	chr2:85876600-85885000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr2:85876600-85895400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:85877000-85889000	Weak transcription	Stomach Mucosa	stomach
12	chr2:85877000-85890000	Weak transcription	Ovary	ovary
13	chr2:85877200-85884800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:85877200-85885200	Weak transcription	Brain Angular Gyrus	brain
15	chr2:85877200-85888600	Weak transcription	Aorta	Aorta
16	chr2:85877200-85893200	Weak transcription	Brain Substantia Nigra	brain
17	chr2:85877800-85890200	Weak transcription	Small Intestine	intestine
18	chr2:85878200-85885200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:85878200-85886400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:85878200-85888800	Weak transcription	Brain Anterior Caudate	brain
21	chr2:85878600-85886200	Weak transcription	Esophagus	oesophagus
22	chr2:85878800-85886600	Weak transcription	Gastric	stomach
23	chr2:85878800-85891400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:85879400-85885200	Weak transcription	Fetal Brain Male	brain
25	chr2:85879400-85888000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:85879400-85889200	Weak transcription	Colonic Mucosa	Colon
27	chr2:85879400-85890200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:85879400-85890200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:85879600-85885200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:85879600-85885800	Weak transcription	Spleen	Spleen
31	chr2:85879600-85887000	Weak transcription	Colon Smooth Muscle	Colon
32	chr2:85879600-85889800	Weak transcription	Fetal Intestine Large	intestine
33	chr2:85879600-85894000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:85879600-85896000	Weak transcription	GM12878-XiMat	blood
35	chr2:85879800-85884800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr2:85879800-85888600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:85880000-85885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:85880000-85886400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:85880000-85888000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr2:85880200-85887800	Weak transcription	HUVEC	blood vessel
41	chr2:85880200-85888800	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:85880400-85891800	Weak transcription	HepG2	liver
43	chr2:85880600-85885400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr2:85880600-85888800	Weak transcription	Left Ventricle	heart
45	chr2:85880600-85889400	Weak transcription	Pancreas	Pancrea
46	chr2:85880600-85889600	Weak transcription	Brain Germinal Matrix	brain
47	chr2:85880600-85890200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:85880600-85890200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr2:85880800-85884800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:85880800-85889800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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