Variant report

Variant	rs3025077
Chromosome Location	chr11:102707057-102707058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102706276..102709144-chr11:102710909..102713466,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3025061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590992	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102700600-102707200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:102704200-102708600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:102706000-102708000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:102706200-102707400	Enhancers	Fetal Stomach	stomach
5	chr11:102706200-102707800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:102706200-102707800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:102706400-102707200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:102706400-102707400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:102706400-102707400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:102706400-102707400	Enhancers	Fetal Intestine Large	intestine
11	chr11:102706400-102707400	Enhancers	Stomach Mucosa	stomach
12	chr11:102706400-102707600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:102706400-102707800	Enhancers	NHDF-Ad	bronchial
14	chr11:102706400-102708000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:102706600-102707400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:102706600-102707400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:102706600-102707400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:102706600-102707400	Enhancers	Colon Smooth Muscle	Colon
19	chr11:102706600-102707600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:102706600-102707600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:102706600-102707600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:102706600-102707600	Enhancers	HMEC	breast
23	chr11:102706600-102707800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:102706600-102707800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:102706600-102707800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:102706600-102707800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:102706600-102707800	Enhancers	NHEK	skin
28	chr11:102706600-102707800	Enhancers	Osteobl	bone
29	chr11:102706600-102708000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:102706600-102708000	Enhancers	Rectal Smooth Muscle	rectum
31	chr11:102706800-102707600	Enhancers	NH-A	brain
32	chr11:102706800-102707800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:102707000-102707400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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