Variant report

Variant	rs3025926
Chromosome Location	chr7:103180038-103180039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs362756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv888923	chr7:103143117-103199719	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103158000-103198600	Weak transcription	Liver	Liver
2	chr7:103168400-103181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:103175200-103180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:103178200-103191400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:103179000-103180200	Weak transcription	Fetal Heart	heart
6	chr7:103179200-103180400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:103179200-103181400	Strong transcription	HepG2	liver
8	chr7:103179400-103181800	Enhancers	Fetal Brain Male	brain
9	chr7:103179400-103182000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:103179600-103181800	Enhancers	Fetal Brain Female	brain
11	chr7:103179600-103182400	Enhancers	Brain Substantia Nigra	brain
12	chr7:103179600-103182800	Enhancers	Brain Germinal Matrix	brain
13	chr7:103179800-103180800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr7:103179800-103182200	Enhancers	Brain Anterior Caudate	brain
15	chr7:103179800-103182400	Enhancers	Brain Cingulate Gyrus	brain
16	chr7:103179800-103182600	Enhancers	Brain Angular Gyrus	brain
17	chr7:103180000-103180400	Weak transcription	Left Ventricle	heart
18	chr7:103180000-103180800	Strong transcription	K562	blood
19	chr7:103180000-103183400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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