Variant report

Variant	rs3026770
Chromosome Location	chr10:43617018-43617019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43609230..43611797-chr10:43616396..43619297,2	K562	blood:
2	chr10:43616473..43618715-chr10:43626088..43628928,2	MCF-7	breast:
3	chr10:43616569..43618189-chr10:43619172..43621560,2	MCF-7	breast:
4	chr10:43611889..43615361-chr10:43616709..43619694,4	MCF-7	breast:
5	chr10:43616246..43618061-chr10:43622272..43624625,2	K562	blood:
6	chr10:43614895..43617172-chr10:43618877..43621238,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1800859	0.83[EUR][1000 genomes]
rs3026769	1.00[EUR][1000 genomes]
rs3026788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34419173	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1038102	chr10:43441601-43642908	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1051701	chr10:43555542-43642895	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046892	chr10:43609488-43636278	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv275022	chr10:43613026-43620551	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3418886	chr10:43616922-43617329	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43601400-43632800	Weak transcription	Gastric	stomach
2	chr10:43601600-43624800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:43606400-43632600	Weak transcription	Right Atrium	heart
4	chr10:43606600-43626000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:43607800-43617400	Weak transcription	Spleen	Spleen
6	chr10:43609800-43626800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:43611800-43621200	Weak transcription	Fetal Intestine Large	intestine
8	chr10:43614400-43617800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:43614600-43618400	Weak transcription	Liver	Liver
10	chr10:43614800-43626800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:43615000-43618200	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:43615200-43618400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:43615400-43617600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:43615400-43617800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:43615400-43618600	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:43615400-43619600	Enhancers	Fetal Muscle Leg	muscle
17	chr10:43615600-43617400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:43615600-43617800	Enhancers	Placenta	Placenta
19	chr10:43615600-43621400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:43615800-43617200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:43615800-43617400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:43615800-43617400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:43615800-43617400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr10:43615800-43617400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:43615800-43617600	Enhancers	Fetal Thymus	thymus
26	chr10:43615800-43617800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:43615800-43618000	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:43615800-43618000	Enhancers	GM12878-XiMat	blood
29	chr10:43616000-43617200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:43616000-43617200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:43616000-43617200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:43616000-43617200	Enhancers	Adipose Nuclei	Adipose
33	chr10:43616000-43617400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr10:43616000-43617400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr10:43616000-43617600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:43616000-43617600	Enhancers	Dnd41	blood
37	chr10:43616000-43618000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr10:43616000-43618000	Enhancers	Primary B cells from cord blood	blood
39	chr10:43616200-43617200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr10:43616200-43617400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:43616400-43617200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:43616400-43617400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:43616400-43617400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:43616400-43617600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr10:43616600-43617200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:43616600-43617200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:43616600-43617200	Enhancers	Duodenum Mucosa	Duodenum
48	chr10:43616600-43617200	Enhancers	HSMM	muscle
49	chr10:43616600-43617400	Enhancers	HSMMtube	muscle
50	chr10:43616600-43617400	Enhancers	HUVEC	blood vessel

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