Variant report

Variant	rs3026926
Chromosome Location	chr1:159111823-159111824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr1:159111501-159112160	H1-hESC	embryonic stem cell:	n/a	chr1:159111588-159111602
2	YY1	chr1:159111294-159112035	SK-N-SH	brain:	n/a	n/a
3	REST	chr1:159110601-159113910	H1-neurons	neurons:	n/a	chr1:159113230-159113238 chr1:159111952-159111960
4	TAF1	chr1:159111334-159112484	H1-neurons	neurons:	n/a	n/a
5	TAF1	chr1:159111244-159112541	H1-neurons	neurons:	n/a	n/a
6	JUND	chr1:159111740-159111920	H1-hESC	embryonic stem cell:	n/a	n/a
7	REST	chr1:159111402-159112630	H1-neurons	neurons:	n/a	chr1:159111952-159111960
8	GATA2	chr1:159110789-159112370	SH-SY5Y	brain:	n/a	chr1:159111743-159111753
9	POLR2A	chr1:159111248-159113227	H1-neurons	neurons:	n/a	n/a
10	SP1	chr1:159111377-159111954	H1-hESC	embryonic stem cell:	n/a	n/a
11	SP1	chr1:159111229-159111860	A549	lung:	n/a	n/a
12	SIN3A	chr1:159111625-159111925	H1-hESC	embryonic stem cell:	n/a	n/a
13	TBP	chr1:159111303-159111845	H1-hESC	embryonic stem cell:	n/a	n/a
14	TEAD4	chr1:159111102-159111870	SK-N-SH	brain:	n/a	n/a
15	POLR2A	chr1:159111233-159112882	H1-neurons	neurons:	n/a	n/a
16	TCF7L2	chr1:159111442-159112027	HEK293	kidney:	n/a	n/a
17	TEAD4	chr1:159111094-159111884	SK-N-SH	brain:	n/a	n/a
18	JUND	chr1:159111261-159111937	SK-N-SH	brain:	n/a	chr1:159111588-159111602
19	SP1	chr1:159111368-159111980	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
AIM2	TF binding region

rs_ID	r²[population]
rs34562319	0.87[AMR][1000 genomes]
rs35012790	0.87[AMR][1000 genomes]
rs863034	0.89[ASN][1000 genomes]

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159110200-159113400	Active TSS	Fetal Brain Female	brain
2	chr1:159110600-159112800	Active TSS	Fetal Brain Male	brain
3	chr1:159110800-159112200	Active TSS	Brain Germinal Matrix	brain
4	chr1:159111000-159112000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:159111000-159112400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:159111200-159112800	Active TSS	Brain Anterior Caudate	brain
7	chr1:159111200-159112800	Active TSS	Brain Cingulate Gyrus	brain
8	chr1:159111200-159112800	Active TSS	Brain Hippocampus Middle	brain
9	chr1:159111400-159112000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr1:159111400-159112000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:159111400-159112000	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr1:159111400-159112000	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr1:159111400-159112200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:159111400-159112200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:159111400-159112800	Active TSS	Brain Angular Gyrus	brain
16	chr1:159111600-159112000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
17	chr1:159111600-159112000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:159111600-159112000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:159111600-159112000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr1:159111600-159112000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:159111600-159112000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:159111600-159112000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:159111600-159112000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:159111600-159112000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:159111600-159112000	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr1:159111600-159112000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:159111600-159112000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:159111600-159112000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:159111600-159112000	Bivalent/Poised TSS	A549	lung
30	chr1:159111600-159112000	Bivalent/Poised TSS	HSMM	muscle
31	chr1:159111600-159112200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr1:159111600-159112200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:159111600-159112200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr1:159111600-159112200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
35	chr1:159111600-159112200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
36	chr1:159111600-159112200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
37	chr1:159111600-159112200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr1:159111600-159112200	Bivalent/Poised TSS	Fetal Stomach	stomach
39	chr1:159111600-159112200	Bivalent/Poised TSS	HSMMtube	muscle
40	chr1:159111600-159112200	Active TSS	NH-A	brain
41	chr1:159111600-159112200	Bivalent/Poised TSS	NHEK	skin
42	chr1:159111600-159112200	Bivalent/Poised TSS	Osteobl	bone
43	chr1:159111600-159112800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:159111800-159112200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr1:159111800-159112200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:159111800-159112200	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr1:159111800-159112200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
48	chr1:159111800-159112200	Bivalent Enhancer	Lung	lung
49	chr1:159111800-159112200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
50	chr1:159111800-159112400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links