Variant report

Variant	rs303509
Chromosome Location	chr10:90464714-90464715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11202825	0.92[AFR][1000 genomes]
rs2163673	0.83[ASN][1000 genomes]
rs303459	0.90[JPT][hapmap]
rs303460	0.90[JPT][hapmap]
rs416237	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs814623	0.90[JPT][hapmap]
rs814625	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs814626	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs814627	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs814628	0.82[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90463200-90468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:90463400-90465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90463400-90465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:90463400-90465600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:90463400-90466000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:90463400-90466600	Weak transcription	HSMM	muscle
7	chr10:90463400-90466600	Weak transcription	Osteobl	bone
8	chr10:90463400-90467200	Weak transcription	Stomach Mucosa	stomach
9	chr10:90463600-90465000	Weak transcription	HMEC	breast
10	chr10:90463600-90465600	Weak transcription	NHEK	skin
11	chr10:90463600-90466400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:90464000-90465600	Weak transcription	Hela-S3	cervix
13	chr10:90464200-90466600	Weak transcription	Fetal Lung	lung
14	chr10:90464200-90466600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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