Variant report

Variant	rs304782
Chromosome Location	chr7:80016757-80016758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs304764	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs304768	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs304770	1.00[CEU][hapmap]
rs304787	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs370442	0.96[EUR][1000 genomes]
rs376086	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80009200-80017200	Weak transcription	Fetal Kidney	kidney
2	chr7:80009400-80017000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:80012800-80016800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:80014400-80017400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:80015200-80016800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:80015400-80017200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:80015800-80017000	Weak transcription	A549	lung
8	chr7:80015800-80022000	Weak transcription	HepG2	liver
9	chr7:80016200-80017000	Enhancers	Liver	Liver
10	chr7:80016200-80017400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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