The 2.0 version of rSNPBase

Variant report

Variant rs30615
Chromosome Location chr5:14780600-14780601
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:14729200-14791000 Weak transcription Small Intestine intestine
2 chr5:14746000-14790200 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr5:14753600-14790000 Weak transcription Ovary ovary
4 chr5:14753600-14801600 Weak transcription Rectal Smooth Muscle rectum
5 chr5:14756800-14781200 Weak transcription Thymus Thymus
6 chr5:14758800-14783800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr5:14759200-14790200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr5:14767400-14809800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr5:14768400-14789800 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr5:14768600-14790000 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr5:14768600-14790200 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr5:14768600-14790200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr5:14768600-14790200 Weak transcription Dnd41 blood
14 chr5:14769000-14780800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr5:14769200-14789400 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr5:14769400-14790600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr5:14769400-14790600 Weak transcription Duodenum Mucosa Duodenum
18 chr5:14774000-14780800 Weak transcription Brain Angular Gyrus brain
19 chr5:14775600-14783800 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr5:14776000-14780800 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr5:14776400-14780600 Weak transcription Hela-S3 cervix
22 chr5:14776400-14785400 Weak transcription Spleen Spleen
23 chr5:14776800-14781000 Weak transcription Brain Anterior Caudate brain
24 chr5:14776800-14784400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:14776800-14790200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr5:14776800-14809400 Weak transcription HMEC breast
27 chr5:14777000-14781400 Weak transcription Fetal Thymus thymus
28 chr5:14777000-14788200 Weak transcription Brain Cingulate Gyrus brain
29 chr5:14777000-14790000 Weak transcription Muscle Satellite Cultured Cells --
30 chr5:14777000-14794200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr5:14777200-14781200 Weak transcription Fetal Muscle Leg muscle
32 chr5:14777200-14806200 Weak transcription Stomach Smooth Muscle stomach
33 chr5:14777200-14810400 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr5:14777200-14811400 Weak transcription Colonic Mucosa Colon
35 chr5:14777400-14782600 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr5:14778200-14781000 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr5:14778200-14805800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr5:14778200-14809400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr5:14778200-14817200 Weak transcription Fetal Brain Female brain
40 chr5:14778400-14784400 Weak transcription Lung lung
41 chr5:14778800-14780800 Weak transcription Brain Substantia Nigra brain
42 chr5:14779000-14781800 Genic enhancers Osteobl bone
43 chr5:14779000-14784000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
44 chr5:14779200-14781000 Weak transcription Right Atrium heart
45 chr5:14779400-14780600 Strong transcription Primary T cells fromperipheralblood blood
46 chr5:14779400-14781600 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr5:14779400-14782600 Enhancers Aorta Aorta
48 chr5:14779600-14781000 Weak transcription Left Ventricle heart
49 chr5:14779600-14781000 Weak transcription Psoas Muscle Psoas
50 chr5:14779600-14781400 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015