Variant report

Variant	rs306577
Chromosome Location	chr5:94052733-94052734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11741678	0.88[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap]
rs13456	0.86[AFR][1000 genomes]
rs2290298	0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2290300	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs306581	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462254	chr5:93956937-94056825	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv598953	chr5:93956937-94056825	ZNF genes & repeats Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs306577	TTC37	cis	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94012600-94053600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:94039000-94064600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:94043600-94053000	Weak transcription	GM12878-XiMat	blood
4	chr5:94043800-94059400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:94047200-94055200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:94048600-94071600	Weak transcription	Lung	lung
7	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:94049400-94053200	Weak transcription	Left Ventricle	heart
9	chr5:94049400-94053400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94049400-94056400	Weak transcription	Aorta	Aorta
11	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
12	chr5:94049800-94077600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:94050600-94053200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:94050600-94065400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:94050600-94069000	Weak transcription	Hela-S3	cervix
16	chr5:94051000-94055200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr5:94051000-94067800	Weak transcription	Fetal Thymus	thymus
18	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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