Variant report

Variant	rs3078184
Chromosome Location	chr10:94607612-94607613
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr10:94607292-94609789	SK-N-SH	brain:	n/a	n/a
2	FOXA1	chr10:94607061-94607621	HepG2	liver:	n/a	n/a
3	ZNF384	chr10:94607386-94607667	GM12878	blood:	n/a	n/a
4	ZNF384	chr10:94607335-94607923	K562	blood:	n/a	n/a
5	E2F4	chr10:94607321-94608436	MCF10A-Er-Src	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134 chr10:94608123-94608134
6	RCOR1	chr10:94606771-94609165	Hela-S3	cervix:	n/a	n/a
7	TCF7L2	chr10:94606743-94607647	Hela-S3	cervix:	n/a	chr10:94607365-94607381
8	HNF4A	chr10:94607344-94607729	HepG2	liver:	n/a	n/a
9	EP300	chr10:94607107-94607651	HepG2	liver:	n/a	chr10:94607337-94607351
10	CEBPB	chr10:94606808-94607680	Hela-S3	cervix:	n/a	chr10:94607150-94607161
11	MAZ	chr10:94607426-94609137	IMR90	lung:	n/a	chr10:94608427-94608436
12	ARID3A	chr10:94607190-94607759	HepG2	liver:	n/a	n/a
13	MYBL2	chr10:94607114-94607748	HepG2	liver:	n/a	n/a
14	HA-E2F1	chr10:94607325-94609231	MCF-7	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134
15	EGR1	chr10:94607585-94609345	HCT-116	colon:	n/a	chr10:94608118-94608129 chr10:94608117-94608130 chr10:94608117-94608130 chr10:94608120-94608130 chr10:94608120-94608129 chr10:94608871-94608885 chr10:94608234-94608243 chr10:94608117-94608130 chr10:94608117-94608131 chr10:94608918-94608932 chr10:94608117-94608130 chr10:94608732-94608745 chr10:94608119-94608129 chr10:94608116-94608131 chr10:94608119-94608129 chr10:94608113-94608135
16	RXRA	chr10:94607188-94607788	HepG2	liver:	n/a	n/a
17	FOXA1	chr10:94607155-94607642	HepG2	liver:	n/a	n/a
18	GATA2	chr10:94607506-94608762	SH-SY5Y	brain:	n/a	n/a
19	RXRA	chr10:94607259-94607684	HepG2	liver:	n/a	n/a
20	POLR2A	chr10:94605616-94609119	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94351135..94353608-chr10:94605711..94608172,2	K562	blood:
3	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
4	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
5	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
6	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000207496	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
2	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:94605400-94608000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr10:94606200-94607800	Weak transcription	Thymus	Thymus
5	chr10:94606600-94607800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr10:94606600-94607800	Enhancers	GM12878-XiMat	blood
7	chr10:94606800-94608000	Flanking Active TSS	Hela-S3	cervix
8	chr10:94607000-94607800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:94607000-94607800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:94607000-94607800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:94607000-94607800	Bivalent Enhancer	NHEK	skin
12	chr10:94607200-94607800	Enhancers	HMEC	breast
13	chr10:94607200-94607800	Enhancers	HUVEC	blood vessel
14	chr10:94607200-94608000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr10:94607200-94608000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr10:94607200-94608000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:94607200-94608000	Enhancers	Stomach Mucosa	stomach
18	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
19	chr10:94607400-94607800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:94607400-94607800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:94607400-94607800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:94607400-94607800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:94607400-94607800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:94607400-94607800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:94607400-94607800	Enhancers	Fetal Muscle Leg	muscle
26	chr10:94607400-94607800	Enhancers	Fetal Thymus	thymus
27	chr10:94607400-94607800	Enhancers	Left Ventricle	heart
28	chr10:94607400-94607800	Enhancers	Lung	lung
29	chr10:94607400-94607800	Enhancers	Right Atrium	heart
30	chr10:94607400-94607800	Enhancers	Right Ventricle	heart
31	chr10:94607400-94607800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:94607400-94607800	Enhancers	Spleen	Spleen
33	chr10:94607400-94608000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr10:94607400-94608000	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr10:94607400-94608000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr10:94607400-94608000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:94607400-94608000	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr10:94607400-94609400	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr10:94607600-94607800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:94607600-94607800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:94607600-94607800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:94607600-94607800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr10:94607600-94607800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr10:94607600-94607800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr10:94607600-94607800	Enhancers	Fetal Brain Male	brain
46	chr10:94607600-94607800	Flanking Active TSS	Fetal Brain Female	brain
47	chr10:94607600-94607800	Flanking Active TSS	Fetal Heart	heart
48	chr10:94607600-94607800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr10:94607600-94607800	Flanking Active TSS	A549	lung
50	chr10:94607600-94608000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links