Variant report

Variant	rs3087270
Chromosome Location	chr2:113893308-113893309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113888649..113891490-chr2:113893231..113895464,3	MCF-7	breast:
2	chr2:113892912..113896093-chr2:113955457..113958866,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125637	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16065	1.00[YRI][hapmap]
rs1794068	1.00[YRI][hapmap]
rs3181059	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs397211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251967	1.00[YRI][hapmap]
rs4251970	1.00[YRI][hapmap]
rs4251984	1.00[YRI][hapmap]
rs4251985	1.00[YRI][hapmap]
rs440286	0.83[EUR][1000 genomes]
rs444413	1.00[YRI][hapmap]
rs579543	0.86[EUR][1000 genomes]
rs9005	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1013513	chr2:113876914-113893482	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113876000-113896200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:113885800-113896200	Weak transcription	Placenta	Placenta
3	chr2:113889600-113895000	Weak transcription	Stomach Mucosa	stomach
4	chr2:113890400-113894800	Enhancers	Fetal Thymus	thymus
5	chr2:113890800-113893600	Weak transcription	Gastric	stomach
6	chr2:113890800-113895000	Weak transcription	Spleen	Spleen
7	chr2:113891600-113894200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:113891600-113896200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:113891600-113896200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:113891600-113896200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:113891800-113895800	Weak transcription	Fetal Intestine Small	intestine
12	chr2:113891800-113896200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:113892000-113894600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr2:113892000-113895800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:113892000-113895800	Weak transcription	Fetal Intestine Large	intestine
16	chr2:113892000-113896000	Weak transcription	HMEC	breast
17	chr2:113892000-113896200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:113892000-113896200	Weak transcription	NHEK	skin
19	chr2:113892200-113893600	Enhancers	HepG2	liver
20	chr2:113892200-113896200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr2:113892200-113896200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:113892200-113896200	Weak transcription	Liver	Liver
23	chr2:113892200-113896200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr2:113892200-113896600	Weak transcription	Esophagus	oesophagus
25	chr2:113892800-113894200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:113893200-113894200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr2:113893200-113895800	Weak transcription	Primary T cells from cord blood	blood
28	chr2:113893200-113896200	Weak transcription	Thymus	Thymus

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