Variant report

Variant	rs3087831
Chromosome Location	chr5:115420598-115420599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:322)
CpG islands
(count:61)
Chromatin interactive
region (count:13)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr5:115420521-115421331	H1-hESC	embryonic stem cell:	n/a	n/a
2	YY1	chr5:115420437-115421213	GM12892	blood:	n/a	chr5:115420684-115420693 chr5:115420684-115420695 chr5:115420570-115420584
3	TCF3	chr5:115420525-115421274	GM12878	blood:	n/a	n/a
4	POLR2A	chr5:115420504-115421551	HepG2	liver:	n/a	n/a
5	CREB1	chr5:115420486-115421385	HepG2	liver:	n/a	n/a
6	BCLAF1	chr5:115420452-115421349	GM12878	blood:	n/a	chr5:115420683-115420692 chr5:115421155-115421164 chr5:115420882-115420895 chr5:115420881-115420894 chr5:115420883-115420892 chr5:115420683-115420696 chr5:115420885-115420898
7	POLR2A	chr5:115420506-115421207	A549	lung:	n/a	n/a
8	REST	chr5:115420534-115421134	K562	blood:	n/a	chr5:115420856-115420869 chr5:115420950-115420963 chr5:115421100-115421110 chr5:115421104-115421124
9	SIN3AK20	chr5:115420327-115421487	MCF-7	breast:	n/a	n/a
10	TAF1	chr5:115420448-115421466	A549	lung:	n/a	n/a
11	POLR2A	chr5:115420571-115421299	HepG2	liver:	n/a	n/a
12	HEY1	chr5:115420501-115421322	K562	blood:	n/a	chr5:115420881-115420896 chr5:115420872-115420887
13	HMGN3	chr5:115420516-115421149	K562	blood:	n/a	n/a
14	SP1	chr5:115420475-115421387	A549	lung:	n/a	n/a
15	CEBPB	chr5:115420543-115421263	Hela-S3	cervix:	n/a	n/a
16	MYC	chr5:115420533-115421553	K562	blood:	n/a	chr5:115421125-115421135
17	MAX	chr5:115420370-115421337	A549	lung:	n/a	chr5:115421125-115421135
18	POLR2A	chr5:115420460-115421442	HUVEC	blood vessel:	n/a	n/a
19	HEY1	chr5:115420456-115421421	K562	blood:	n/a	chr5:115420881-115420896 chr5:115420872-115420887
20	POLR2A	chr5:115420393-115421381	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr5:115420419-115421376	ProgFib	skin:	n/a	n/a
22	ELF1	chr5:115420505-115421293	HepG2	liver:	n/a	n/a
23	YY1	chr5:115420500-115421149	H1-hESC	embryonic stem cell:	n/a	chr5:115420684-115420693 chr5:115420684-115420695 chr5:115420570-115420584
24	SIN3AK20	chr5:115420471-115421357	MCF-7	breast:	n/a	n/a
25	POLR2A	chr5:115420522-115421281	HL-60	blood:	n/a	n/a
26	POLR2A	chr5:115419668-115421380	GM12892	blood:	n/a	n/a
27	YY1	chr5:115420515-115421273	SK-N-SH_RA	brain:	n/a	chr5:115420684-115420693 chr5:115420684-115420695 chr5:115420570-115420584
28	POLR2A	chr5:115420524-115421278	A549	lung:	n/a	n/a
29	ELF1	chr5:115420506-115421261	K562	blood:	n/a	n/a
30	REST	chr5:115419901-115421564	H1-neurons	neurons:	n/a	chr5:115420856-115420869 chr5:115420950-115420963 chr5:115421100-115421110 chr5:115421104-115421124
31	USF1	chr5:115420518-115420799	SK-N-SH_RA	brain:	n/a	n/a
32	POLR2A	chr5:115420549-115421354	HepG2	liver:	n/a	n/a
33	YY1	chr5:115420492-115421308	HCT-116	colon:	n/a	chr5:115420684-115420693 chr5:115420684-115420695 chr5:115420570-115420584
34	SIN3AK20	chr5:115420536-115421298	SK-N-SH	brain:	n/a	n/a
35	ELF1	chr5:115420382-115421543	MCF-7	breast:	n/a	n/a
36	POLR2A	chr5:115419426-115421369	GM12878	blood:	n/a	n/a
37	GABPA	chr5:115420434-115421530	A549	lung:	n/a	n/a
38	FOXA1	chr5:115420120-115420647	T-47D	breast:	n/a	n/a
39	REST	chr5:115420469-115420841	PFSK-1	brain:	n/a	n/a
40	MAX	chr5:115420434-115421486	HepG2	liver:	n/a	chr5:115421125-115421135
41	BHLHE40	chr5:115420576-115421337	GM12878	blood:	n/a	n/a
42	POLR2A	chr5:115420496-115421322	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr5:115420457-115421258	ECC-1	luminal epithelium:	n/a	n/a
44	TBL1XR1	chr5:115420520-115421312	GM12878	blood:	n/a	n/a
45	E2F6	chr5:115420487-115421534	H1-hESC	embryonic stem cell:	n/a	n/a
46	ELF1	chr5:115420479-115421248	GM12878	blood:	n/a	n/a
47	MEF2C	chr5:115420403-115421310	GM12878	blood:	n/a	n/a
48	POLR2A	chr5:115419653-115421382	Raji	blood:	n/a	n/a
49	TAF1	chr5:115420507-115421362	PFSK-1	brain:	n/a	n/a
50	ELF1	chr5:115420395-115421482	SK-N-SH	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:115420582-115420632	RPTEC	kidney:	n/a
2	chr5:115420582-115420632	NB4	blood:	n/a
3	chr5:115420582-115420632	MCF-7	breast:	n/a
4	chr5:115420582-115420632	GM12891	blood:	n/a
5	chr5:115420582-115420632	SK-N-MC	brain:	n/a
6	chr5:115420582-115420632	AG04450	lung:	fetal
7	chr5:115420582-115420632	GM06990	blood:	n/a
8	chr5:115420582-115420632	Jurkat	blood:	n/a
9	chr5:115420582-115420632	Caco-2	colon:	n/a
10	chr5:115420582-115420632	HNPCEpiC	eye:	n/a
11	chr5:115420582-115420632	HEK293	kidney:	embryo
12	chr5:115420582-115420632	NHBE	bronchial:	n/a
13	chr5:115420582-115420632	HRPEpiC	eye:	n/a
14	chr5:115420582-115420632	HAEpiC	amniotic membrane:	n/a
15	chr5:115420582-115420632	LNCaP	prostate:	n/a
16	chr5:115420582-115420632	PANC-1	pancreas:	n/a
17	chr5:115420582-115420632	ECC-1	luminal epithelium:	n/a
18	chr5:115420582-115420632	AG09309	skin:	n/a
19	chr5:115420582-115420632	SK-N-SH_RA	brain:	n/a
20	chr5:115420582-115420632	A549	lung:	n/a
21	chr5:115420582-115420632	HMEC	breast:	n/a
22	chr5:115420582-115420632	CMK	blood:	n/a
23	chr5:115420582-115420632	AG04449	skin:	fetal
24	chr5:115420582-115420632	HEEpiC	esophagus:	n/a
25	chr5:115420582-115420632	SK-N-SH	brain:	n/a
26	chr5:115420582-115420632	Hepatocyte	liver:	n/a
27	chr5:115420582-115420632	K562	blood:	n/a
28	chr5:115420582-115420632	NH-A	brain:	n/a
29	chr5:115420582-115420632	AG09319	gingival:	n/a
30	chr5:115420582-115420632	HCT-116	colon:	n/a
31	chr5:115420582-115420632	SKMC	muscle:	n/a
32	chr5:115420582-115420632	GM12892	blood:	n/a
33	chr5:115420582-115420632	HRE	kidney:	n/a
34	chr5:115420582-115420632	NHDF-neo	bronchial:	n/a
35	chr5:115420582-115420632	HepG2	liver:	n/a
36	chr5:115420582-115420632	H1-hESC	embryonic stem cell:	embryo
37	chr5:115420582-115420632	NT2-D1	testis:	n/a
38	chr5:115420582-115420632	MCF10A-Er-Src	breast:	n/a
39	chr5:115420582-115420632	AoSMC	blood vessel:	n/a
40	chr5:115420582-115420632	Hela-S3	cervix:	n/a
41	chr5:115420582-115420632	PrEC	prostate:	n/a
42	chr5:115420582-115420632	HIPEpiC	eye:	n/a
43	chr5:115420582-115420632	ProgFib	skin:	n/a
44	chr5:115420582-115420632	T-47D	breast:	n/a
45	chr5:115420582-115420632	U87	brain:	n/a
46	chr5:115420582-115420632	PFSK-1	brain:	n/a
47	chr5:115420582-115420632	BE2_C	brain:	n/a
48	chr5:115420582-115420632	GM19239	blood:	n/a
49	chr5:115420582-115420632	HPAEpiC	pulmonary alveolar:	n/a
50	chr5:115420582-115420632	HCF	heart:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:184425377..184425891-chr5:115420080..115420819,2	Hela-S3	cervix:
2	chr5:115413293..115416934-chr5:115419212..115422160,5	MCF-7	breast:
3	chr5:115177392..115178980-chr5:115419410..115421076,2	MCF-7	breast:
4	chr5:114960090..114964183-chr5:115419193..115421485,4	MCF-7	breast:
5	chr5:115409968..115416849-chr5:115417165..115422986,15	K562	blood:
6	chr16:3073983..3074533-chr5:115420524..115421124,2	Hela-S3	cervix:
7	chr5:115177015..115179299-chr5:115418616..115421272,3	K562	blood:
8	chr5:115412238..115416929-chr5:115418524..115421820,7	MCF-7	breast:
9	chr5:115418542..115422487-chr5:115423504..115427625,5	MCF-7	breast:
10	chr5:115418515..115421238-chr5:115424044..115426973,2	MCF-7	breast:
11	chr5:115420205..115422091-chr5:138940296..138941951,2	MCF-7	breast:
12	chr5:115175649..115178515-chr5:115418843..115420963,3	K562	blood:
13	chr17:39845051..39845605-chr5:115420384..115421275,2	Hela-S3	cervix:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATG12-5	chr5:115419504-115421113	ENSG00000271918.1
2	lnc-ATG12-5	chr5:115419214-115420722	NONHSAT103353

No data

Variant related genes	Relation type
COMMD10	TF binding region
COMMD10	CpG island
ENSG00000177879	Chromatin interaction
ENSG00000103145	Chromatin interaction
ENSG00000145781	Chromatin interaction
ENSG00000243414	Chromatin interaction
ENSG00000251201	Chromatin interaction
ENSG00000232648	Chromatin interaction
ENSG00000134970	Chromatin interaction
ENSG00000131508	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000145782	Chromatin interaction
ENSG00000272265	Chromatin interaction
ENSG00000131652	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1129495	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1567330	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1567331	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1567332	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17138834	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17138841	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17138848	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17138850	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17138866	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17138879	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2136213	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3087832	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3946989	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4921058	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4921060	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56953556	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57697861	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58172625	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58510083	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59429923	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61105089	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61632432	0.89[AFR][1000 genomes]
rs61672521	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6882942	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6890263	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73271268	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73780832	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7703978	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7728055	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1027418	chr5:115206256-115446861	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv515611	chr5:115208843-115428381	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1021968	chr5:115213162-115426468	Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1024008	chr5:115222974-115431050	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1027117	chr5:115222974-115442883	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	esv2763487	chr5:115222986-115442895	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv462400	chr5:115223504-115428381	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv599478	chr5:115223504-115428381	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1030480	chr5:115228889-115446861	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv599479	chr5:115233116-115450969	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv1015976	chr5:115236239-115434163	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv537868	chr5:115236239-115434163	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv882736	chr5:115254723-115552945	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv882737	chr5:115263853-115552945	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
17	nsv527320	chr5:115382097-115573543	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	nsv1027266	chr5:115382704-115501792	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
20	nsv1032199	chr5:115384131-115525738	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
21	esv2830404	chr5:115386661-115490546	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv1019972	chr5:115386860-115563533	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
23	nsv537869	chr5:115386860-115563533	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
24	nsv1018861	chr5:115397834-115563533	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv537870	chr5:115397834-115563533	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115419600-115421400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr5:115419600-115421600	Active TSS	Brain Cingulate Gyrus	brain
3	chr5:115419800-115420600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:115419800-115421600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:115419800-115421800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:115419800-115421800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:115419800-115422000	Active TSS	Fetal Kidney	kidney
8	chr5:115420000-115421400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:115420000-115421600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr5:115420000-115421600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:115420000-115421600	Active TSS	Colon Smooth Muscle	Colon
12	chr5:115420000-115421600	Active TSS	Ovary	ovary
13	chr5:115420000-115421600	Active TSS	GM12878-XiMat	blood
14	chr5:115420000-115421800	Active TSS	Fetal Intestine Large	intestine
15	chr5:115420000-115421800	Active TSS	NHDF-Ad	bronchial
16	chr5:115420000-115422000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:115420000-115422000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr5:115420000-115422000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:115420000-115422000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr5:115420000-115422000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr5:115420000-115422200	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr5:115420000-115422200	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr5:115420000-115422200	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr5:115420200-115420600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:115420200-115420600	Active TSS	Right Atrium	heart
26	chr5:115420200-115421200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:115420200-115421200	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr5:115420200-115421200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr5:115420200-115421200	Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr5:115420200-115421200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:115420200-115421200	Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr5:115420200-115421200	Active TSS	Dnd41	blood
33	chr5:115420200-115421200	Active TSS	HepG2	liver
34	chr5:115420200-115421200	Active TSS	NH-A	brain
35	chr5:115420200-115421400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:115420200-115421400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:115420200-115421400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:115420200-115421400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:115420200-115421400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr5:115420200-115421400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr5:115420200-115421400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:115420200-115421400	Active TSS	Primary T cells from cord blood	blood
43	chr5:115420200-115421400	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr5:115420200-115421400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr5:115420200-115421400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr5:115420200-115421400	Active TSS	Esophagus	oesophagus
47	chr5:115420200-115421400	Active TSS	Fetal Brain Male	brain
48	chr5:115420200-115421400	Active TSS	Fetal Heart	heart
49	chr5:115420200-115421400	Active TSS	Gastric	stomach
50	chr5:115420200-115421400	Active TSS	Lung	lung

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