Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86864508..86866719-chr2:86874258..86877076,2	MCF-7	breast:
2	chr2:86873575..86875458-chr2:86877472..86879638,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10165914	0.88[ASN][1000 genomes]
rs10178968	0.88[ASN][1000 genomes]
rs10184617	0.85[ASN][1000 genomes]
rs10197478	0.88[ASN][1000 genomes]
rs10206802	0.88[ASN][1000 genomes]
rs11127049	0.86[ASN][1000 genomes]
rs12613610	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12988718	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13407663	0.88[ASN][1000 genomes]
rs1370452	0.88[ASN][1000 genomes]
rs308921	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36100635	0.84[ASN][1000 genomes]
rs4832047	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4832048	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4832306	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59818518	0.83[ASN][1000 genomes]
rs6547701	0.88[ASN][1000 genomes]
rs72934456	0.88[ASN][1000 genomes]
rs72934463	0.86[ASN][1000 genomes]
rs72934466	0.88[ASN][1000 genomes]
rs7564251	0.88[ASN][1000 genomes]
rs9808243	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1011590	chr2:86824181-86906114	Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86873000-86875000	Weak transcription	Pancreas	Pancrea
2	chr2:86873800-86875800	Weak transcription	Stomach Mucosa	stomach
3	chr2:86874000-86875000	Weak transcription	Primary hematopoietic stem cells	blood

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