Variant report
| Variant | rs3091840 |
|---|---|
| Chromosome Location | chr20:41037521-41037522 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11086835 | 0.84[EUR][1000 genomes] |
| rs11086836 | 0.86[EUR][1000 genomes] |
| rs11696790 | 0.84[EUR][1000 genomes] |
| rs11697439 | 0.84[EUR][1000 genomes] |
| rs11905262 | 0.87[EUR][1000 genomes] |
| rs11907033 | 0.84[EUR][1000 genomes] |
| rs11907414 | 0.84[EUR][1000 genomes] |
| rs12480171 | 0.88[EUR][1000 genomes] |
| rs12480310 | 0.84[EUR][1000 genomes] |
| rs12481706 | 0.84[EUR][1000 genomes] |
| rs2425493 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2425495 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34733708 | 0.84[EUR][1000 genomes] |
| rs55634456 | 0.84[EUR][1000 genomes] |
| rs55953368 | 0.87[EUR][1000 genomes] |
| rs56017218 | 0.84[EUR][1000 genomes] |
| rs57287359 | 0.82[EUR][1000 genomes] |
| rs59669560 | 0.88[EUR][1000 genomes] |
| rs60573844 | 0.82[EUR][1000 genomes] |
| rs73121630 | 0.87[EUR][1000 genomes] |
| rs73121632 | 0.84[EUR][1000 genomes] |
| rs73121633 | 0.91[EUR][1000 genomes] |
| rs73121641 | 0.84[EUR][1000 genomes] |
| rs73121645 | 0.84[EUR][1000 genomes] |
| rs73121659 | 0.87[EUR][1000 genomes] |
| rs73121664 | 0.87[EUR][1000 genomes] |
| rs73123352 | 0.81[EUR][1000 genomes] |
| rs73123354 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv532516 | chr20:40451059-41097155 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv833987 | chr20:41007663-41184914 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 4 | esv3378637 | chr20:41037338-41040536 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:41022400-41039400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
