Variant report

Variant	rs3092857
Chromosome Location	chr11:108143299-108143300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108091534..108093578-chr11:108141865..108143860,2	K562	blood:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction
ENSG00000149311	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4987880	1.00[AMR][1000 genomes]
rs4987899	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987905	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988029	1.00[AMR][1000 genomes]
rs4988055	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988127	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58989781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv898385	chr11:108123189-108165736	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
2	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
4	chr11:108096400-108156400	Weak transcription	NHLF	lung
5	chr11:108104200-108147400	Weak transcription	Gastric	stomach
6	chr11:108104600-108144000	Weak transcription	Lung	lung
7	chr11:108108200-108144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:108108400-108184800	Weak transcription	NHEK	skin
9	chr11:108108800-108147600	Weak transcription	Psoas Muscle	Psoas
10	chr11:108113800-108147200	Weak transcription	Aorta	Aorta
11	chr11:108122000-108147400	Weak transcription	Spleen	Spleen
12	chr11:108126000-108153600	Weak transcription	HUVEC	blood vessel
13	chr11:108126200-108157600	Weak transcription	HMEC	breast
14	chr11:108126800-108149200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:108129000-108145800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:108129000-108148000	Weak transcription	Pancreas	Pancrea
17	chr11:108129000-108155400	Weak transcription	HSMMtube	muscle
18	chr11:108129800-108146600	Weak transcription	Colonic Mucosa	Colon
19	chr11:108129800-108147400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:108131200-108145400	Weak transcription	Fetal Intestine Large	intestine
21	chr11:108131200-108147400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:108131400-108147400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:108131800-108144200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:108131800-108144200	Weak transcription	Left Ventricle	heart
25	chr11:108131800-108147200	Weak transcription	Thymus	Thymus
26	chr11:108131800-108147400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:108132200-108147200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:108132200-108147200	Weak transcription	Fetal Intestine Small	intestine
30	chr11:108132200-108147400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:108132200-108148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:108137400-108146000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:108137400-108147400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:108137400-108147800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:108137400-108148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:108137600-108148400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:108137600-108150600	Strong transcription	Fetal Thymus	thymus
38	chr11:108137800-108144000	Strong transcription	HSMM	muscle
39	chr11:108137800-108145000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:108137800-108145000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:108137800-108146000	Strong transcription	Dnd41	blood
42	chr11:108137800-108147400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:108137800-108148200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:108137800-108149200	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:108137800-108150000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:108137800-108150800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:108137800-108159400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:108137800-108160400	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:108138000-108143600	Weak transcription	Fetal Brain Female	brain

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