Variant report

Variant	rs3093064
Chromosome Location	chr1:159684381-159684382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:159684337-159684387	HRE	kidney:	n/a
2	chr1:159684337-159684387	NHBE	bronchial:	n/a
3	chr1:159684337-159684387	BE2_C	brain:	n/a
4	chr1:159684337-159684387	GM06990	blood:	n/a
5	chr1:159684337-159684387	LNCaP	prostate:	n/a
6	chr1:159684337-159684387	ECC-1	luminal epithelium:	n/a
7	chr1:159684337-159684387	HRCEpiC	kidney:	n/a
8	chr1:159684337-159684387	ovcar-3	ovarian:	n/a
9	chr1:159684337-159684387	BJ	skin:	n/a
10	chr1:159684337-159684387	SKMC	muscle:	n/a
11	chr1:159684337-159684387	SAEC	small airway:	n/a
12	chr1:159684337-159684387	H1-hESC	embryonic stem cell:	embryo
13	chr1:159684337-159684387	HPAEpiC	pulmonary alveolar:	n/a
14	chr1:159684337-159684387	NHDF-neo	bronchial:	n/a
15	chr1:159684337-159684387	SK-N-SH_RA	brain:	n/a
16	chr1:159684337-159684387	Caco-2	colon:	n/a
17	chr1:159684337-159684387	MCF10A-Er-Src	breast:	n/a
18	chr1:159684337-159684387	AoSMC	blood vessel:	n/a
19	chr1:159684337-159684387	PFSK-1	brain:	n/a
20	chr1:159684337-159684387	Hepatocyte	liver:	n/a
21	chr1:159684337-159684387	HMEC	breast:	n/a
22	chr1:159684337-159684387	AG04449	skin:	fetal
23	chr1:159684337-159684387	CMK	blood:	n/a
24	chr1:159684337-159684387	HCT-116	colon:	n/a
25	chr1:159684337-159684387	AG09309	skin:	n/a
26	chr1:159684337-159684387	AG09319	gingival:	n/a
27	chr1:159684337-159684387	U87	brain:	n/a
28	chr1:159684337-159684387	GM12892	blood:	n/a
29	chr1:159684337-159684387	HUVEC	blood vessel:	n/a
30	chr1:159684337-159684387	K562	blood:	n/a
31	chr1:159684337-159684387	NT2-D1	testis:	n/a
32	chr1:159684337-159684387	AG10803	skin:	n/a
33	chr1:159684337-159684387	HepG2	liver:	n/a
34	chr1:159684337-159684387	HNPCEpiC	eye:	n/a
35	chr1:159684337-159684387	HAEpiC	amniotic membrane:	n/a
36	chr1:159684337-159684387	PrEC	prostate:	n/a
37	chr1:159684337-159684387	A549	lung:	n/a
38	chr1:159684337-159684387	SK-N-MC	brain:	n/a
39	chr1:159684337-159684387	PANC-1	pancreas:	n/a
40	chr1:159684337-159684387	GM19239	blood:	n/a
41	chr1:159684337-159684387	MCF-7	breast:	n/a
42	chr1:159684337-159684387	HRPEpiC	eye:	n/a
43	chr1:159684337-159684387	GM12878	blood:	n/a
44	chr1:159684337-159684387	IMR90	lung:	fetal
45	chr1:159684337-159684387	ProgFib	skin:	n/a
46	chr1:159684337-159684387	HCM	heart:	n/a
47	chr1:159684337-159684387	Hela-S3	cervix:	n/a
48	chr1:159684337-159684387	GM12891	blood:	n/a
49	chr1:159684337-159684387	HEEpiC	esophagus:	n/a
50	chr1:159684337-159684387	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
CRP	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3093067	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159683600-159684400	Active TSS	Liver	Liver
2	chr1:159684200-159684400	Enhancers	Pancreas	Pancrea

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