Variant report

Variant	rs309326
Chromosome Location	chr2:7154081-7154082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7147550..7151799-chr2:7153014..7155237,5	MCF-7	breast:
2	chr2:7153739..7156212-chr2:7156438..7158208,2	MCF-7	breast:
3	chr2:7145702..7149842-chr2:7151104..7154625,5	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2460402	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2460404	0.80[EUR][1000 genomes]
rs2460405	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs2680762	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs309321	0.88[CEU][hapmap]
rs309327	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs381214	0.91[CEU][hapmap];0.85[AFR][1000 genomes]
rs388773	0.80[CEU][hapmap]
rs412098	0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs416411	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs438627	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs443649	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs443852	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs445411	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs447721	0.91[CEU][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:7131600-7154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:7131600-7154200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
8	chr2:7144200-7154600	Weak transcription	HepG2	liver
9	chr2:7145200-7156200	Enhancers	Brain Angular Gyrus	brain
10	chr2:7146800-7156000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:7147000-7154800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:7147200-7158600	Enhancers	Colon Smooth Muscle	Colon
13	chr2:7147400-7156000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:7147400-7157000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:7147400-7159200	Weak transcription	Thymus	Thymus
16	chr2:7147600-7155600	Enhancers	NHDF-Ad	bronchial
17	chr2:7148000-7155800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:7148200-7156000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr2:7148200-7159400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:7148600-7154400	Weak transcription	Primary B cells from cord blood	blood
22	chr2:7148800-7154200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:7148800-7154200	Weak transcription	GM12878-XiMat	blood
24	chr2:7148800-7154600	Weak transcription	Fetal Brain Female	brain
25	chr2:7148800-7155400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:7148800-7156400	Enhancers	Brain Hippocampus Middle	brain
27	chr2:7148800-7158000	Weak transcription	Brain Germinal Matrix	brain
28	chr2:7148800-7159200	Enhancers	Brain Substantia Nigra	brain
29	chr2:7148800-7160200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:7148800-7160800	Enhancers	Fetal Heart	heart
31	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:7149000-7157800	Enhancers	Brain Anterior Caudate	brain
33	chr2:7149200-7154400	Weak transcription	K562	blood
34	chr2:7149200-7154600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr2:7149200-7158200	Weak transcription	Fetal Intestine Small	intestine
36	chr2:7149200-7159200	Enhancers	Brain Cingulate Gyrus	brain
37	chr2:7149200-7159400	Weak transcription	Placenta	Placenta
38	chr2:7149200-7160000	Weak transcription	Esophagus	oesophagus
39	chr2:7149200-7160400	Weak transcription	Lung	lung
40	chr2:7149200-7163800	Weak transcription	Gastric	stomach
41	chr2:7149400-7157000	Weak transcription	Colonic Mucosa	Colon
42	chr2:7150000-7155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:7150000-7157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr2:7150000-7159000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr2:7150600-7157000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:7150600-7162400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr2:7150800-7155200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr2:7150800-7157600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr2:7151000-7155400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr2:7151000-7159800	Weak transcription	Fetal Thymus	thymus

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