Variant report

Variant	rs3095291
Chromosome Location	chr6:29637710-29637711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1611371	0.82[ASN][1000 genomes]
rs1611380	0.82[ASN][1000 genomes]
rs2071652	0.84[ASN][1000 genomes]
rs2071653	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3095285	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3095292	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3116798	0.84[ASN][1000 genomes]
rs3117290	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129029	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3129043	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3129190	0.84[ASN][1000 genomes]
rs3131854	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6905408	0.84[ASN][1000 genomes]
rs9257940	0.84[ASN][1000 genomes]
rs9257953	0.84[ASN][1000 genomes]
rs9257986	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29630800-29643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:29631400-29640200	Weak transcription	NHEK	skin
4	chr6:29632000-29638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:29634600-29641000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:29634600-29642000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:29635600-29639600	Strong transcription	Brain Substantia Nigra	brain
8	chr6:29636000-29639800	Strong transcription	Brain Cingulate Gyrus	brain
9	chr6:29636400-29639000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:29636400-29643800	Weak transcription	Fetal Heart	heart
11	chr6:29636600-29638000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:29636600-29638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:29636600-29638400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:29636600-29642000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:29636600-29644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:29637000-29644400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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