Variant report

Variant	rs3097825
Chromosome Location	chr5:167504371-167504372
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2033464	0.81[CHB][hapmap]
rs2617989	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2878892	0.89[GIH][hapmap]
rs3097824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6858921	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6859094	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7723257	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167500600-167504800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:167501000-167512800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:167501600-167514800	Weak transcription	NHEK	skin
6	chr5:167501800-167504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:167501800-167511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167502000-167504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:167503400-167504400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:167503400-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167504000-167511600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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