Variant report

Variant	rs3097907
Chromosome Location	chr4:124763694-124763695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1025505	0.89[EUR][1000 genomes]
rs1116266	0.81[ASN][1000 genomes]
rs12640716	0.95[ASN][1000 genomes]
rs1347185	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433215	0.89[EUR][1000 genomes]
rs3097904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3097905	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3097937	0.81[ASN][1000 genomes]
rs3097939	0.87[ASN][1000 genomes]
rs3113387	0.89[EUR][1000 genomes]
rs979755	0.89[EUR][1000 genomes]
rs986345	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2754745	chr4:124698055-124770865	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3097907	NUDT6	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124752400-124764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:124752400-124769000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:124758400-124769000	Weak transcription	Left Ventricle	heart
4	chr4:124758600-124764000	Weak transcription	NH-A	brain
5	chr4:124758600-124765400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:124760000-124763800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:124760400-124764000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:124761000-124764200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:124761800-124764000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:124761800-124764200	Weak transcription	NHLF	lung
11	chr4:124763000-124764000	Weak transcription	NHDF-Ad	bronchial
12	chr4:124763000-124764200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:124763000-124771000	Weak transcription	Aorta	Aorta
14	chr4:124763200-124764200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:124763200-124765200	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:124763400-124764600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:124763600-124764200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:124763600-124764400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr4:124763600-124764400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:124763600-124764400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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