Variant report

Variant	rs3098205
Chromosome Location	chr15:50742977-50742978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50741336..50743241-chr15:50745091..50747576,2	K562	blood:
2	chr15:50737403..50740009-chr15:50742579..50744249,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10152326	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070776	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12593481	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2289108	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28582911	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3098167	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3098168	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3098169	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3098171	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3098174	0.85[CEU][hapmap]
rs3098177	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs3098183	0.95[CHB][hapmap]
rs3098190	0.89[CHB][hapmap]
rs3098194	0.89[CHB][hapmap]
rs3098198	0.89[CHB][hapmap]
rs3109887	0.89[CHB][hapmap]
rs3131560	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3131562	0.80[CEU][hapmap]
rs3131565	0.81[CHB][hapmap]
rs3131566	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3131567	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3131568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3131574	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3131609	0.95[CHB][hapmap]
rs4318151	0.85[CEU][hapmap]
rs512708	0.84[CHB][hapmap]
rs56398519	0.81[AMR][1000 genomes]
rs679774	0.89[CHB][hapmap]
rs7170543	0.89[CHB][hapmap]
rs7174015	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8026653	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv904210	chr15:50702058-50786024	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50717400-50747000	Weak transcription	Aorta	Aorta
2	chr15:50717600-50764600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:50717600-50774800	Weak transcription	Stomach Mucosa	stomach
4	chr15:50717800-50758800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:50718000-50755400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:50718000-50757000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:50722800-50764600	Weak transcription	Esophagus	oesophagus
8	chr15:50723200-50743800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:50724600-50755800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:50724800-50764600	Weak transcription	Pancreas	Pancrea
11	chr15:50728200-50750200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:50730400-50744400	Strong transcription	Fetal Intestine Small	intestine
13	chr15:50730800-50754200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:50731000-50748800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:50731200-50748400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:50731600-50748800	Strong transcription	Fetal Intestine Large	intestine
17	chr15:50732200-50749000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:50732800-50744600	Weak transcription	K562	blood
19	chr15:50733000-50747000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:50733400-50744400	Weak transcription	HSMMtube	muscle
21	chr15:50733400-50744800	Weak transcription	Fetal Kidney	kidney
22	chr15:50733400-50745000	Weak transcription	NHLF	lung
23	chr15:50733400-50747000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:50733400-50747000	Weak transcription	Fetal Lung	lung
25	chr15:50733400-50747000	Weak transcription	Small Intestine	intestine
26	chr15:50733400-50747400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:50733400-50785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:50733600-50743400	Weak transcription	NHDF-Ad	bronchial
29	chr15:50733600-50758200	Weak transcription	HMEC	breast
30	chr15:50733600-50758800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:50733800-50743000	Weak transcription	A549	lung
32	chr15:50733800-50746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:50733800-50747000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr15:50733800-50752800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:50733800-50755800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:50734000-50746400	Weak transcription	Brain Angular Gyrus	brain
37	chr15:50734000-50747000	Weak transcription	Fetal Brain Female	brain
38	chr15:50734000-50763200	Weak transcription	Brain Anterior Caudate	brain
39	chr15:50734000-50776400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:50734000-50785600	Weak transcription	Fetal Brain Male	brain
41	chr15:50734600-50752800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr15:50734600-50772600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:50734800-50747200	Weak transcription	Brain Hippocampus Middle	brain
44	chr15:50734800-50748000	Weak transcription	Colonic Mucosa	Colon
45	chr15:50735400-50743800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:50735400-50764600	Weak transcription	Psoas Muscle	Psoas
47	chr15:50735600-50746200	Weak transcription	Gastric	stomach
48	chr15:50735600-50746200	Weak transcription	Ovary	ovary
49	chr15:50735600-50773000	Weak transcription	Brain Substantia Nigra	brain
50	chr15:50736000-50746600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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