Variant report

Variant	rs3101754
Chromosome Location	chr5:167381456-167381457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1123570	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167378600-167381600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:167379400-167394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:167379800-167386800	Weak transcription	Right Ventricle	heart
4	chr5:167380000-167381800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167380000-167386800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:167380600-167381800	Weak transcription	Left Ventricle	heart
7	chr5:167380600-167382200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:167380600-167387600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167380600-167394800	Weak transcription	HSMM	muscle
10	chr5:167380800-167383400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167380800-167394200	Weak transcription	NHEK	skin
12	chr5:167381000-167393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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