Variant report

Variant	rs3102246
Chromosome Location	chr11:122272606-122272607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2086804	0.82[ASN][1000 genomes]
rs2086805	0.81[ASN][1000 genomes]
rs2882414	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3102249	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898431	chr11:122123313-122484112	Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:122266600-122288400	Weak transcription	Placenta	Placenta
2	chr11:122269200-122287600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:122269400-122273600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:122271000-122285200	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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